An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in
FNR/CRP proteins
comparative genomics
genome sequencing
post-transcriptional control
proteogenomics
rhizobia
symbiosis
transcriptomics
Journal
Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977
Informations de publication
Date de publication:
2019
2019
Historique:
received:
15
02
2019
accepted:
11
04
2019
entrez:
29
5
2019
pubmed:
28
5
2019
medline:
28
5
2019
Statut:
epublish
Résumé
The adaptation of rhizobia from the free-living state in soil to the endosymbiotic state comprises several physiological changes in order to cope with the extremely low oxygen availability (microoxia) within nodules. To uncover cellular functions required for bacterial adaptation to microoxia directly at the protein level, we applied a systems biology approach on the key rhizobial model and soybean endosymbiont
Identifiants
pubmed: 31134003
doi: 10.3389/fmicb.2019.00924
pmc: PMC6515984
doi:
Types de publication
Journal Article
Langues
eng
Pagination
924Références
Mol Plant Microbe Interact. 1999 Mar;12(3):218-26
pubmed: 10065559
Electrophoresis. 1999 Dec;20(18):3514-20
pubmed: 10612277
Mol Plant Microbe Interact. 2000 Mar;13(3):325-33
pubmed: 10707358
Microbiology. 2000 Mar;146 ( Pt 3):669-76
pubmed: 10746770
J Bacteriol. 2000 May;182(10):2838-44
pubmed: 10781553
Mol Plant Microbe Interact. 2000 Sep;13(9):995-1009
pubmed: 10975656
J Bacteriol. 2001 Feb;183(4):1300-11
pubmed: 11157943
Electrophoresis. 2001 Feb;22(3):586-98
pubmed: 11258772
Arch Microbiol. 2001 Jul;176(1-2):136-42
pubmed: 11479713
Can J Microbiol. 2002 Nov;48(11):947-54
pubmed: 12556122
DNA Res. 2002 Dec 31;9(6):189-97
pubmed: 12597275
FEMS Microbiol Lett. 2003 Mar 28;220(2):261-9
pubmed: 12670690
Mol Plant Microbe Interact. 2003 Jun;16(6):508-24
pubmed: 12795377
J Bacteriol. 2003 Jul;185(13):3978-82
pubmed: 12813094
J Bacteriol. 2003 Sep;185(18):5639-42
pubmed: 12949117
FEMS Microbiol Rev. 2003 Dec;27(5):559-92
pubmed: 14638413
Microbiology. 2003 Dec;149(Pt 12):3395-403
pubmed: 14663073
Antonie Van Leeuwenhoek. 2004 Apr;85(3):229-35
pubmed: 15028871
Proteomics. 2004 Jul;4(7):1859-72
pubmed: 15221743
J Bacteriol. 2004 Aug;186(15):4960-71
pubmed: 15262933
Nat Rev Microbiol. 2004 Aug;2(8):621-31
pubmed: 15263897
J Bacteriol. 2005 May;187(10):3329-38
pubmed: 15866917
Proteomics. 2005 Nov;5(16):4170-84
pubmed: 16254929
J Bacteriol. 2006 Jan;188(2):733-44
pubmed: 16385063
Microbiology. 2006 Jan;152(Pt 1):199-207
pubmed: 16385130
Biochem Soc Trans. 2006 Feb;34(Pt 1):156-9
pubmed: 16417509
J Exp Bot. 2006;57(8):1769-76
pubmed: 16698817
Plant Physiol. 2007 Jul;144(3):1495-507
pubmed: 17545507
Mol Genet Genomics. 2007 Sep;278(3):255-71
pubmed: 17569992
J Bacteriol. 2007 Dec;189(24):8928-43
pubmed: 17951393
Mol Plant Microbe Interact. 2007 Nov;20(11):1353-63
pubmed: 17977147
Mol Genet Genomics. 2008 Mar;279(3):203-11
pubmed: 18214545
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W5-9
pubmed: 18440982
Mol Genet Genomics. 2008 Jul;280(1):59-72
pubmed: 18446372
J Bacteriol. 2008 Oct;190(20):6568-79
pubmed: 18689489
J Mol Biol. 2008 Dec 12;384(2):503-11
pubmed: 18835567
Nat Methods. 2009 May;6(5):359-62
pubmed: 19377485
Environ Microbiol. 2010 Feb;12(2):393-400
pubmed: 19840105
J Proteome Res. 2009 Dec;8(12):5674-8
pubmed: 19848406
Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21860-5
pubmed: 19955406
Proteomics. 2010 Apr;10(7):1391-400
pubmed: 20104621
J Biol Chem. 2010 May 21;285(21):15704-13
pubmed: 20335176
Mol Plant Microbe Interact. 2010 Jun;23(6):784-90
pubmed: 20459317
Bioinformatics. 2010 Jul 1;26(13):1608-15
pubmed: 20472543
Mol Genet Genomics. 2010 Jul;284(1):25-32
pubmed: 20524010
PLoS One. 2010 Jun 25;5(6):e11147
pubmed: 20593022
Nat Biotechnol. 2010 Jul;28(7):647-50
pubmed: 20622826
Science. 2010 Jul 30;329(5991):533-8
pubmed: 20671182
Nat Rev Mol Cell Biol. 2010 Nov;11(11):789-801
pubmed: 20944666
Mol Plant Microbe Interact. 1990 Sep-Oct;3(5):308-16
pubmed: 2134855
FEMS Microbiol Lett. 2011 Jun;319(2):133-9
pubmed: 21470300
Mol Plant Microbe Interact. 2011 Dec;24(12):1440-7
pubmed: 21864045
Brief Bioinform. 2013 Mar;14(2):178-92
pubmed: 22517427
Adv Microb Physiol. 2012;60:325-89
pubmed: 22633062
Environ Microbiol. 2012 Jul;14(7):1788-800
pubmed: 22642644
Fly (Austin). 2012 Apr-Jun;6(2):80-92
pubmed: 22728672
PLoS One. 2012;7(8):e43421
pubmed: 22916258
J Biol Chem. 2012 Nov 9;287(46):38812-23
pubmed: 23012364
FEBS Lett. 2013 Jan 4;587(1):88-93
pubmed: 23187170
BMC Genomics. 2013 Mar 07;14:156
pubmed: 23497287
Int J Syst Evol Microbiol. 2013 Sep;63(Pt 9):3342-51
pubmed: 23504968
Genome Res. 2013 Nov;23(11):1916-27
pubmed: 23878158
BMC Microbiol. 2013 Jul 31;13:180
pubmed: 23898917
Bioinformatics. 2014 May 1;30(9):1236-40
pubmed: 24451626
Appl Environ Microbiol. 2014 Apr;80(7):2094-101
pubmed: 24463964
Int J Mol Sci. 2014 Feb 28;15(3):3660-70
pubmed: 24590127
PLoS One. 2014 Jun 20;9(6):e99011
pubmed: 24949739
Nat Commun. 2014 Oct 31;5:5277
pubmed: 25358478
Genome Biol. 2014;15(12):550
pubmed: 25516281
Mol Cell Proteomics. 2015 May;14(5):1301-22
pubmed: 25724908
J Proteomics. 2015 Jul 1;125:112-20
pubmed: 25982383
Annu Rev Microbiol. 2015;69:229-45
pubmed: 26195304
Int J Mol Sci. 2015 Jul 22;16(7):16695-709
pubmed: 26204840
Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93
pubmed: 26582926
Bioinformatics. 2016 Jun 1;32(11):1749-51
pubmed: 26826718
Nat Commun. 2016 Apr 15;7:11307
pubmed: 27079541
Front Plant Sci. 2016 Apr 08;7:454
pubmed: 27092165
BMC Genomics. 2016 Apr 23;17:302
pubmed: 27107716
Front Microbiol. 2016 Apr 22;7:518
pubmed: 27148207
Int J Mol Sci. 2016 May 27;17(6):
pubmed: 27240350
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24
pubmed: 27342282
Nat Biotechnol. 2016 Nov;34(11):1198-1205
pubmed: 27748755
Nitric Oxide. 2017 Aug 1;68:137-149
pubmed: 28167162
New Phytol. 2017 Jul;215(1):40-56
pubmed: 28211601
J Bacteriol. 2017 Jul 11;199(15):
pubmed: 28533217
Front Plant Sci. 2017 Jul 18;8:1267
pubmed: 28769967
Front Microbiol. 2017 Aug 30;8:1621
pubmed: 28912756
Genome Res. 2017 Dec;27(12):2083-2095
pubmed: 29141959
Nat Rev Microbiol. 2018 May;16(5):291-303
pubmed: 29379215
Bioinformatics. 2018 Sep 15;34(18):3094-3100
pubmed: 29750242
High Throughput. 2018 May 18;7(2):null
pubmed: 29783718
Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965
pubmed: 30137508
Nucleic Acids Res. 2019 Jan 8;47(D1):D442-D450
pubmed: 30395289
Arch Microbiol. 1983 Aug;135(2):103-9
pubmed: 6639271
J Bacteriol. 1995 Jul;177(14):3979-84
pubmed: 7608070
J Biol Chem. 1995 Aug 25;270(34):19823-7
pubmed: 7649992
Microbiol Rev. 1994 Sep;58(3):352-86
pubmed: 7968919
EMBO J. 1993 Sep;12(9):3373-83
pubmed: 8253065
Anal Biochem. 1993 Mar;209(2):323-6
pubmed: 8385891
Nat Struct Biol. 1996 Jun;3(6):539-46
pubmed: 8646540
Arch Microbiol. 1996 May;165(5):297-305
pubmed: 8661920
Trends Microbiol. 1996 Aug;4(8):317-20
pubmed: 8856870
J Bacteriol. 1998 Oct;180(19):5251-5
pubmed: 9748464
EMBO J. 1998 Oct 1;17(19):5658-69
pubmed: 9755166