Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence Analysis.

Antiretroviral therapy HIV Molecular epidemiology Pooled sequence analysis Pre-treatment drug resistance South Africa Surveillance

Journal

EClinicalMedicine
ISSN: 2589-5370
Titre abrégé: EClinicalMedicine
Pays: England
ID NLM: 101733727

Informations de publication

Date de publication:
Mar 2019
Historique:
received: 10 09 2018
revised: 01 03 2019
accepted: 05 03 2019
entrez: 31 5 2019
pubmed: 31 5 2019
medline: 31 5 2019
Statut: epublish

Résumé

South Africa has the largest public antiretroviral therapy (ART) programme in the world. We assessed temporal trends in pretreatment HIV-1 drug resistance (PDR) in ART-naïve adults from South Africa. We included datasets from studies conducted between 2000 and 2016, with HIV-1 We identified 38 datasets, and retrieved 6880 HIV-1 Increasing PDR in South Africa presents a threat to the efforts to end the HIV/AIDS epidemic. These findings support the recent decision to modify the standard first-line ART regimen, but also highlights the need for broader public health action to prevent the further emergence and transmission of drug-resistant HIV. This research project was funded by the South African Medical Research Council (MRC) with funds from National Treasury under its Economic Competitiveness and Support Package. The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of CDC.

Sections du résumé

BACKGROUND BACKGROUND
South Africa has the largest public antiretroviral therapy (ART) programme in the world. We assessed temporal trends in pretreatment HIV-1 drug resistance (PDR) in ART-naïve adults from South Africa.
METHODS METHODS
We included datasets from studies conducted between 2000 and 2016, with HIV-1
FINDINGS RESULTS
We identified 38 datasets, and retrieved 6880 HIV-1
INTERPRETATION CONCLUSIONS
Increasing PDR in South Africa presents a threat to the efforts to end the HIV/AIDS epidemic. These findings support the recent decision to modify the standard first-line ART regimen, but also highlights the need for broader public health action to prevent the further emergence and transmission of drug-resistant HIV.
SOURCE OF FUNDING BACKGROUND
This research project was funded by the South African Medical Research Council (MRC) with funds from National Treasury under its Economic Competitiveness and Support Package.
DISCLAIMER CONCLUSIONS
The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of CDC.

Identifiants

pubmed: 31143879
doi: 10.1016/j.eclinm.2019.03.006
pii: S2589-5370(19)30042-2
pmc: PMC6510720
doi:

Types de publication

Journal Article

Langues

eng

Pagination

26-34

Subventions

Organisme : NIAID NIH HHS
ID : R24 AI136618
Pays : United States

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Auteurs

Benjamin Chimukangara (B)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Department of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.

Richard J Lessells (RJ)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Soo-Yon Rhee (SY)

Department of Medicine, Stanford University, Stanford, CA, United States of America.

Jennifer Giandhari (J)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.

Ayesha B M Kharsany (ABM)

Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Kogieleum Naidoo (K)

Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
South African Medical Research Council (SAMRC)-CAPRISA HIV-TB Pathogenesis and Treatment Research Unit, Durban, South Africa.

Lara Lewis (L)

Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Cherie Cawood (C)

Epicentre AIDS Risk Management (Pty) Limited, PO Box 3484, Paarl, Cape Town, South Africa.

David Khanyile (D)

Epicentre AIDS Risk Management (Pty) Limited, PO Box 3484, Paarl, Cape Town, South Africa.

Kassahun A Ayalew (KA)

Centers for Disease Control and Prevention, Pretoria, South Africa.

Karidia Diallo (K)

Centers for Disease Control and Prevention, Pretoria, South Africa.

Reshmi Samuel (R)

Department of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.

Gillian Hunt (G)

Centre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.
Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.

Alain Vandormael (A)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
School of Nursing and Public Health, University of KwaZulu-Natal, Durban, South Africa.

Babill Stray-Pedersen (B)

Institute of Clinical Medicine, University of Oslo, Oslo University Hospital, Oslo, Norway.

Michelle Gordon (M)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.

Tariro Makadzange (T)

Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard, Cambridge, MA, United States of America.

Photini Kiepiela (P)

HIV Prevention Research Unit, Medical Research Council, Durban, South Africa.

Gita Ramjee (G)

HIV Prevention Research Unit, Medical Research Council, Durban, South Africa.

Johanna Ledwaba (J)

Centre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.

Monalisa Kalimashe (M)

Centre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.

Lynn Morris (L)

Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.
Centre for HIV and STIs, National Institute for Communicable Diseases (NICD), Johannesburg, South Africa.
Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.

Urvi M Parikh (UM)

Department of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States of America.

John W Mellors (JW)

Department of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA, United States of America.

Robert W Shafer (RW)

Department of Medicine, Stanford University, Stanford, CA, United States of America.

David Katzenstein (D)

Department of Medicine, Stanford University, Stanford, CA, United States of America.

Pravi Moodley (P)

Department of Virology, National Health Laboratory Service, University of KwaZulu-Natal, Durban, South Africa.

Ravindra K Gupta (RK)

Department of Infection, University College London, United Kingdom of Great Britain and Northern Ireland.
Africa Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.

Deenan Pillay (D)

Department of Infection, University College London, United Kingdom of Great Britain and Northern Ireland.
Africa Health Research Institute, University of KwaZulu-Natal, Durban, South Africa.

Salim S Abdool Karim (SS)

Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Tulio de Oliveira (T)

KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Department of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Centre for the AIDS Programme of Research in South Africa (CAPRISA), Doris Duke Medical Research Institute, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa.

Classifications MeSH