Comparison of
Anti-Bacterial Agents
/ pharmacology
Base Sequence
Cephalosporins
/ pharmacology
China
/ epidemiology
Computational Biology
/ methods
Drug Resistance, Multiple, Bacterial
/ genetics
Genes, Bacterial
Humans
Macrolides
/ pharmacology
Penicillins
/ pharmacology
Portugal
/ epidemiology
Sequence Alignment
Syphilis
/ drug therapy
Treponema pallidum
/ drug effects
United States
/ epidemiology
Journal
Journal of biosciences
ISSN: 0973-7138
Titre abrégé: J Biosci
Pays: India
ID NLM: 8100809
Informations de publication
Date de publication:
Jun 2019
Jun 2019
Historique:
entrez:
11
6
2019
pubmed:
11
6
2019
medline:
28
11
2019
Statut:
ppublish
Résumé
Syphilis is a sexually transmitted infection caused by Treponema pallidum, which is highly prevalent in several countries, including Brazil. The use of bioinformatics' tools for the identification of resistance genes is an important practice for the study of microorganisms, such as T. pallidum. In this study, the complete genomes of 43 strains of T. pallidum, isolated from different countries, were analyzed. A total of 41,514 sequences were obtained, and compared against prokaryote resistance gene databases using BLASTn, BLASTx and RGI for gene alignment and prediction. From the alignments, it was possible to identify antibiotic resistance genes for each strain. The genes identified in each comparison were grouped according to the antibiotic category in which they show resistance to. The antibiotic-resistant genes related to drugs used to treat syphilis were grouped separately. The in silico tools used have shown to be effective in identifying resistance genes in genomes of T. pallidum strains. Due to the lack of research and accurate information regarding the antibiotic resistance genes in T. pallidum, this study serves as a basis for studies in molecular biology whose aim is the identification of these genes, besides being a reference to help in the control and treatment of this infection.
Substances chimiques
Anti-Bacterial Agents
0
Cephalosporins
0
Macrolides
0
Penicillins
0
Types de publication
Comparative Study
Journal Article
Langues
eng
Sous-ensembles de citation
IM
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