Dynamical modelling of secondary metabolism and metabolic switches in

Streptomyces dynamical landscape metabolic modelling metabolic switch secondary metabolism systems biology

Journal

Royal Society open science
ISSN: 2054-5703
Titre abrégé: R Soc Open Sci
Pays: England
ID NLM: 101647528

Informations de publication

Date de publication:
Apr 2019
Historique:
received: 13 03 2019
accepted: 18 03 2019
entrez: 12 6 2019
pubmed: 12 6 2019
medline: 12 6 2019
Statut: epublish

Résumé

The production of secondary metabolites, while important for bioengineering purposes, presents a paradox in itself. Though widely existing in plants and bacteria, they have no definite physiological roles. Yet in both native habitats and laboratories, their production appears robust and follows apparent metabolic switches. We show in this work that the enzyme-catalysed process may improve the metabolic stability of the cells. The latter can be responsible for the overall metabolic behaviours such as dynamic metabolic landscape, metabolic switches and robustness, which can in turn affect the genetic formation of the organism in question. Mangrove-derived

Identifiants

pubmed: 31183155
doi: 10.1098/rsos.190418
pii: rsos190418
pmc: PMC6502367
doi:

Banques de données

figshare
['10.6084/m9.figshare.c.4452389']

Types de publication

Journal Article

Langues

eng

Pagination

190418

Commentaires et corrections

Type : ErratumIn

Déclaration de conflit d'intérêts

We declare we have no competing interests.

Références

Biotechnol Bioeng. 2002 May 5;78(3):296-312
pubmed: 11920446
Curr Opin Microbiol. 2006 Oct;9(5):445-53
pubmed: 16942902
Curr Opin Microbiol. 2008 Apr;11(2):161-7
pubmed: 18373943
Curr Opin Pharmacol. 2008 Oct;8(5):557-63
pubmed: 18524678
Sheng Wu Gong Cheng Xue Bao. 2008 Jun;24(6):980-94
pubmed: 18807980
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):472-6
pubmed: 19244424
BMC Genomics. 2010 Jan 06;11:10
pubmed: 20053288
BMC Genomics. 2010 Mar 26;11:202
pubmed: 20338070
Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11692-7
pubmed: 20547882
J Biotechnol. 2011 Apr 10;152(4):132-43
pubmed: 20797416
Curr Opin Biotechnol. 2011 Aug;22(4):552-8
pubmed: 21498065
Proteomics. 2011 Dec;11(24):4622-31
pubmed: 21956891
ACS Chem Biol. 2012 Feb 17;7(2):252-9
pubmed: 22074935
Mol Microbiol. 2012 Dec;86(6):1490-507
pubmed: 23078239
Biotechnol Bioeng. 2013 Apr;110(4):1057-65
pubmed: 23124997
J Ind Microbiol Biotechnol. 2014 Feb;41(2):415-24
pubmed: 24326978
J Ind Microbiol Biotechnol. 2014 Feb;41(2):175-84
pubmed: 24342967
Ann Rev Mar Sci. 2014;6:195-219
pubmed: 24405426
Angew Chem Int Ed Engl. 2014 Mar 10;53(11):3011-4
pubmed: 24519911
Angew Chem Int Ed Engl. 2014 May 5;53(19):4840-4
pubmed: 24706593
PLoS One. 2014 Jun 11;9(6):e99537
pubmed: 24919072
Cell Res. 2015 Jul;25(7):771-84
pubmed: 26045163
Sci Rep. 2016 Jan 08;6:18977
pubmed: 26744183
Metab Eng. 2016 May;35:129-137
pubmed: 26969249
Nat Commun. 2016 Jun 02;7:11605
pubmed: 27251447
Phys Rev E. 2016 Jun;93(6):062409
pubmed: 27415300
Sci Rep. 2017 Jan 18;7:40689
pubmed: 28098172
Rep Prog Phys. 2017 Apr;80(4):042701
pubmed: 28212112
J Biol Chem. 2017 Oct 13;292(41):16942-16954
pubmed: 28830930
Bioprocess Biosyst Eng. 2018 May;41(5):657-669
pubmed: 29404683
ACS Synth Biol. 2018 Sep 21;7(9):2094-2104
pubmed: 30103600

Auteurs

Xiao-Mei Zhu (XM)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.
Shanghai Center for Quantitative Life Sciences and Physics Department, Shanghai University, Shanghai 200444, People's Republic of China.

Xing-Xing Zhang (XX)

Shanghai Center for Quantitative Life Sciences and Physics Department, Shanghai University, Shanghai 200444, People's Republic of China.

Run-Tan Cheng (RT)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.

He-Lin Yu (HL)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.

Ruo-Shi Yuan (RS)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.

Xu-Liang Bu (XL)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.
School of Oceanography, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China.

Jun Xu (J)

School of Oceanography, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China.

Ping Ao (P)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.
Shanghai Center for Quantitative Life Sciences and Physics Department, Shanghai University, Shanghai 200444, People's Republic of China.

Yong-Cong Chen (YC)

Shanghai Center for Quantitative Life Sciences and Physics Department, Shanghai University, Shanghai 200444, People's Republic of China.

Min-Juan Xu (MJ)

Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, People's Republic of China.

Classifications MeSH