Unraveling the protonation site of oxazole and solvation with hydrophobic ligands by infrared photodissociation spectroscopy.


Journal

Physical chemistry chemical physics : PCCP
ISSN: 1463-9084
Titre abrégé: Phys Chem Chem Phys
Pays: England
ID NLM: 100888160

Informations de publication

Date de publication:
10 Jul 2019
Historique:
pubmed: 28 6 2019
medline: 28 6 2019
entrez: 28 6 2019
Statut: ppublish

Résumé

Protonation and solvation of heterocyclic aromatic building blocks control the structure and function of many biological macromolecules. Herein the infrared photodissociation (IRPD) spectra of protonated oxazole (H+Ox) microsolvated by nonpolar and quadrupolar ligands, H+Ox-Ln with L = Ar (n = 1-2) and L = N2 (n = 1-4), are analyzed by density functional theory calculations at the dispersion-corrected B3LYP-D3/aug-cc-pVTZ level to determine the preferred protonation and ligand binding sites. Cold H+Ox-Ln clusters are generated in an electron impact cluster ion source. Protonation of Ox occurs exclusively at the N atom of the heterocyclic ring, in agreement with the thermochemical predictions. The analysis of the systematic shifts of the NH stretch frequency in the IRPD spectra of H+Ox-Ln provides a clear picture of the sequential cluster growth and the type and strength of various competing ligand binding motifs. The most stable structures observed for the H+Ox-L dimers (n = 1) exhibit a linear NHL hydrogen bond (H-bond), while π-bonded isomers with L attached to the aromatic ring are local minima on the potential and thus occur at a lower abundance. From the spectra of the H+Ox-L(π) isomers, the free NH frequency of bare H+Ox is extrapolated as νNH = 3444 ± 3 cm-1. The observed H+Ox-L2 clusters with L = N2 feature both bifurcated NHL2 (2H isomer) and linear NHL H-bonding motifs (H/π isomer), while for L = Ar only the linear H-bond is observed. No H+Ox-L2(2π) isomers are detected, confirming that H-bonding to the NH group is more stable than π-bonding to the ring. The most stable H+Ox-(N2)n clusters with n = 3-4 have 2H/(n - 2)π structures, in which the stable 2H core ion is further solvated by (n - 2) π-bonded ligands. Upon N-protonation, the aromatic C-H bonds of the Ox ring get slightly stronger, as revealed by higher CH stretch frequencies and strongly increased IR intensities.

Identifiants

pubmed: 31243398
doi: 10.1039/c9cp02787d
doi:

Types de publication

Journal Article

Langues

eng

Pagination

15157-15166

Auteurs

Kuntal Chatterjee (K)

Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany. dopfer@physik.tu-berlin.de.

Otto Dopfer (O)

Institut für Optik und Atomare Physik, TU Berlin, Hardenbergstr. 36, 10623 Berlin, Germany. dopfer@physik.tu-berlin.de.

Classifications MeSH