Single-Cell High-Throughput Technologies in Cerebrospinal Fluid Research and Diagnostics.
RNA sequencing (RNAseq)
cerebrospinal fluid (CSF)
flow cytometry
mass spectrometry
repertoire sequencing
single cell gene expression
Journal
Frontiers in immunology
ISSN: 1664-3224
Titre abrégé: Front Immunol
Pays: Switzerland
ID NLM: 101560960
Informations de publication
Date de publication:
2019
2019
Historique:
received:
15
04
2019
accepted:
22
05
2019
entrez:
28
6
2019
pubmed:
28
6
2019
medline:
17
7
2020
Statut:
epublish
Résumé
High-throughput single-cell technologies have recently emerged as essential tools in biomedical research with great potential for clinical pathology when studying liquid and solid biopsies. We provide an update on current single-cell methods in cerebrospinal fluid research and diagnostics, focusing on high-throughput cell-type specific proteomic and genomic technologies. Proteomic methods comprising flow cytometry and mass cytometry as well as genomic approaches including immune cell repertoire and single-cell transcriptomic studies are critically reviewed and future directions discussed.
Identifiants
pubmed: 31244848
doi: 10.3389/fimmu.2019.01302
pmc: PMC6579921
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
1302Références
Cytometry A. 2003 Oct;55(2):61-70
pubmed: 14505311
Nat Genet. 2018 Nov;50(11):1553-1564
pubmed: 30349114
Brain. 2001 Nov;124(Pt 11):2169-76
pubmed: 11673319
Clin Exp Immunol. 2015 Jun;180(3):383-92
pubmed: 25603898
JCI Insight. 2019 Mar 21;4(6):
pubmed: 30747723
Neuron. 2019 Jan 16;101(2):207-223.e10
pubmed: 30606613
Nat Methods. 2018 Aug;15(8):563-565
pubmed: 30065371
JAMA Neurol. 2013 Mar 1;70(3):345-51
pubmed: 23599932
Brain. 2005 Jul;128(Pt 7):1667-76
pubmed: 15800022
Brief Funct Genomics. 2018 Jul 1;17(4):233-239
pubmed: 29126257
Gene. 2015 Nov 10;572(2):191-7
pubmed: 26172868
J Neuroimmunol. 2013 Jan 15;254(1-2):165-9
pubmed: 22948090
Acta Neurol Scand. 1998 Nov;98(5):310-3
pubmed: 9858099
Cytotechnology. 2012 Mar;64(2):109-30
pubmed: 22271369
Science. 2017 Dec 22;358(6370):1622-1626
pubmed: 29217582
Front Immunol. 2018 Mar 19;9:509
pubmed: 29616027
Nat Rev Genet. 2016 Mar;17(3):175-88
pubmed: 26806412
Ann Neurol. 2009 Aug;66(2):171-83
pubmed: 19705413
Eur J Neurol. 2006 Sep;13(9):913-22
pubmed: 16930354
Nat Methods. 2016 Apr;13(4):329-332
pubmed: 26950746
Brain. 2016 Oct;139(Pt 10):2641-2652
pubmed: 27543972
Science. 2017 Mar 31;355(6332):
pubmed: 28360267
Eur J Neurol. 2019 Jun;26(6):919-926
pubmed: 30659722
J Neuroimmunol. 2009 Aug 18;213(1-2):123-30
pubmed: 19631394
Nat Med. 2008 Jun;14(6):688-93
pubmed: 18488038
Cell. 2016 Dec 15;167(7):1883-1896.e15
pubmed: 27984734
Cell. 2019 Feb 7;176(4):775-789.e18
pubmed: 30595452
Cell. 2016 May 5;165(4):780-91
pubmed: 27153492
Science. 1969 Nov 7;166(3906):747-9
pubmed: 4898615
Nat Methods. 2013 Nov;10(11):1096-8
pubmed: 24056875
Science. 2017 Apr 21;356(6335):
pubmed: 28428369
Nature. 2017 Jul 6;547(7661):94-98
pubmed: 28636589
ASN Neuro. 2015 Oct 21;7(5):
pubmed: 26489686
Science. 2016 Jun 24;352(6293):1586-90
pubmed: 27339989
Nature. 2015 Jul 23;523(7561):486-90
pubmed: 26083756
BMC Immunol. 2014 Aug 05;15:29
pubmed: 25189176
J Immunol Methods. 2010 Sep 30;361(1-2):1-20
pubmed: 20655312
Nat Med. 2018 May;24(5):580-590
pubmed: 29686426
Cytometry. 1998 Oct 15;34(5):207-15
pubmed: 9822306
Nature. 2019 Feb;566(7745):543-547
pubmed: 30747918
Nature. 2016 Nov 10;539(7628):309-313
pubmed: 27806376
Nat Commun. 2020 Jan 14;11(1):247
pubmed: 31937773
Nat Neurosci. 2018 Apr;21(4):541-551
pubmed: 29507414
Cancer. 1998 Feb 15;82(4):733-9
pubmed: 9477107
J Neuroimmunol. 1995 Dec;63(1):39-46
pubmed: 8557823
Front Immunol. 2013 Dec 26;4:485
pubmed: 24421780
Nat Med. 2019 Jan;25(1):89-94
pubmed: 30510250
Nat Rev Microbiol. 2008 Nov;6(11 Suppl):S7-15
pubmed: 18923413
Acta Neuropathol. 2017 Jan;133(1):43-60
pubmed: 27730299
Nat Biotechnol. 2015 Nov;33(11):1165-72
pubmed: 26458175
Science. 2019 Jan 25;363(6425):
pubmed: 30679343
Immunity. 2019 Feb 19;50(2):493-504.e7
pubmed: 30737144
Curr Protoc Cytom. 2008 Jul;Chapter 6:Unit 6.25
pubmed: 18770650
Brain. 2011 Feb;134(Pt 2):534-41
pubmed: 21216828
Nat Biotechnol. 2018 Dec 03;:
pubmed: 30531897
Nat Methods. 2019 Jul;16(7):619-626
pubmed: 31209384
J Histochem Cytochem. 1966 Dec;14(12):929-31
pubmed: 17121392
Science. 2011 May 6;332(6030):687-96
pubmed: 21551058
PLoS Pathog. 2018 Apr 30;14(4):e1007042
pubmed: 29709026
J Exp Med. 2016 Nov 14;213(12):2621-2633
pubmed: 27821550
Nat Methods. 2017 Oct;14(10):955-958
pubmed: 28846088
J Neuroimmunol. 2012 Aug 15;249(1-2):86-92
pubmed: 22633193
Cytometry B Clin Cytom. 2011 Jan;80(1):43-50
pubmed: 20632412
Clin Exp Immunol. 2018 Jul;193(1):103-112
pubmed: 29485697
Arch Pathol Lab Med. 2013 Nov;137(11):1610-8
pubmed: 24168498
Immunity. 2018 Feb 20;48(2):380-395.e6
pubmed: 29426702
Sci Transl Med. 2014 Aug 6;6(248):248ra106
pubmed: 25100740
Leukemia. 2016 Dec;30(12):2312-2321
pubmed: 27211266
Open Forum Infect Dis. 2015 Sep 01;2(3):ofv124
pubmed: 26393235
Neurobiol Aging. 2015 Jan;36(1):81-9
pubmed: 25277040
J Immunol Res. 2021 Jul 3;2021:8880585
pubmed: 34285924
J Neurol. 2014 Jan;261(1):130-43
pubmed: 24162037
JCI Insight. 2018 Nov 2;3(21):
pubmed: 30385717
Lancet. 2015 Feb 26;385 Suppl 1:S46
pubmed: 26312868
Allergol Int. 2018 Jan;67(1):43-54
pubmed: 28684198
Nat Biotechnol. 2018 Jan;36(1):89-94
pubmed: 29227470
Eur J Immunol. 2017 Oct;47(10):1584-1797
pubmed: 29023707
Sci Transl Med. 2014 Aug 6;6(248):248ra107
pubmed: 25100741
Philos Trans R Soc Lond B Biol Sci. 2015 Sep 5;370(1676):
pubmed: 26194757
Proc Natl Acad Sci U S A. 2016 May 24;113(21):E2973-82
pubmed: 27162345
Sci Transl Med. 2009 Dec 23;1(12):12ra23
pubmed: 20161664
Cytometry B Clin Cytom. 2017 Jan;92(1):68-78
pubmed: 27598832
J Clin Invest. 2012 Dec;122(12):4533-43
pubmed: 23160197
J Neurooncol. 1985;3(2):165-71
pubmed: 4031974
Nat Commun. 2016 Apr 04;7:11153
pubmed: 27040081
N Engl J Med. 2017 Jan 19;376(3):209-220
pubmed: 28002688
Nat Protoc. 2018 Apr;13(4):599-604
pubmed: 29494575
Proc Natl Acad Sci U S A. 2014 Jul 1;111(26):E2770-7
pubmed: 24979804
N Engl J Med. 2017 Jan 19;376(3):221-234
pubmed: 28002679
JCI Insight. 2018 Sep 20;3(18):
pubmed: 30232286
Nat Neurosci. 2017 Sep;20(9):1300-1309
pubmed: 28758994
Nature. 2019 Feb;566(7744):388-392
pubmed: 30760929
Nat Methods. 2016 Mar;13(3):269-75
pubmed: 26808670
J Proteome Res. 2018 Aug 3;17(8):2565-2571
pubmed: 29945450
Ann Clin Transl Neurol. 2016 Apr 20;3(6):422-33
pubmed: 27547770
Brain. 2009 Dec;132(Pt 12):3329-41
pubmed: 19933767
Science. 2013 Dec 6;342(6163):1243259
pubmed: 24311695
Arthritis Rheumatol. 2014 Oct;66(10):2706-15
pubmed: 24965753