Social support for collaboration and group awareness in life science research teams.

Life science teams collaboration Social interactions Working group awareness

Journal

Source code for biology and medicine
ISSN: 1751-0473
Titre abrégé: Source Code Biol Med
Pays: England
ID NLM: 101276533

Informations de publication

Date de publication:
2019
Historique:
received: 15 07 2015
accepted: 01 07 2019
entrez: 20 7 2019
pubmed: 20 7 2019
medline: 20 7 2019
Statut: epublish

Résumé

Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of '-omics' research areas. They produce a plethora of information requiring specific knowledge in sample preparation, analysis and characterization. Additionally, expertise and competencies are required when using bioinformatics tools and methods for efficient analysis, interpretation, and visualization of data. These skills are rarely covered in a single laboratory. More often the samples are isolated and purified in a first laboratory, sequencing is performed by a private company or a specialized lab, while the produced data are analyzed by a third group of researchers. In this scenario, the support, the communication, and the information sharing among researchers represent the key points to build a common knowledge and to meet the project objectives. We present ElGalaxy, a system designed and developed to support collaboration and information sharing among researchers. Specifically, we integrated collaborative functionalities within an application usually adopted by Life Science researchers. ElGalaxy, therefore, is the result of the integration of Galaxy, i.e., a Workflow Management System, with Elgg, i.e., a Social Network Engine. ElGalaxy enables scientists, that work on the same experiment, to collaborate and share information, to discuss about methods, and to evaluate results of the individual steps, as well as of entire activities, performed during their experiments. ElGalaxy also allows a greater team awareness, especially when experiments are carried out with researchers which belong to different and distributed research centers.

Sections du résumé

BACKGROUND BACKGROUND
Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of '-omics' research areas. They produce a plethora of information requiring specific knowledge in sample preparation, analysis and characterization. Additionally, expertise and competencies are required when using bioinformatics tools and methods for efficient analysis, interpretation, and visualization of data. These skills are rarely covered in a single laboratory. More often the samples are isolated and purified in a first laboratory, sequencing is performed by a private company or a specialized lab, while the produced data are analyzed by a third group of researchers. In this scenario, the support, the communication, and the information sharing among researchers represent the key points to build a common knowledge and to meet the project objectives.
RESULTS RESULTS
We present ElGalaxy, a system designed and developed to support collaboration and information sharing among researchers. Specifically, we integrated collaborative functionalities within an application usually adopted by Life Science researchers. ElGalaxy, therefore, is the result of the integration of Galaxy, i.e., a Workflow Management System, with Elgg, i.e., a Social Network Engine.
CONCLUSIONS CONCLUSIONS
ElGalaxy enables scientists, that work on the same experiment, to collaborate and share information, to discuss about methods, and to evaluate results of the individual steps, as well as of entire activities, performed during their experiments. ElGalaxy also allows a greater team awareness, especially when experiments are carried out with researchers which belong to different and distributed research centers.

Identifiants

pubmed: 31320922
doi: 10.1186/s13029-019-0074-4
pii: 74
pmc: PMC6615102
doi:

Types de publication

Journal Article

Langues

eng

Pagination

4

Déclaration de conflit d'intérêts

Competing interestsThe authors declare that they have no competing interests.

Références

Genome Res. 2005 Oct;15(10):1451-5
pubmed: 16169926
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W677-82
pubmed: 20501605
Genome Biol. 2010;11(8):R86
pubmed: 20738864
Bioinformatics. 2013 Jul 15;29(14):1837-9
pubmed: 23732274
Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544
pubmed: 29790989

Auteurs

Delfina Malandrino (D)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Ilaria Manno (I)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Alberto Negro (A)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Andrea Petta (A)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Luigi Serra (L)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Concita Cantarella (C)

2Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria, Pontecagnano (SA), Salerno, Italy.

Vittorio Scarano (V)

Dipartimento di Informatica, Università degli Studi di Salerno, Via Giovanni Paolo II, Fisciano (SA), Italy.

Classifications MeSH