Towards a standardized bioinformatics infrastructure for N- and O-glycomics.
Journal
Nature communications
ISSN: 2041-1723
Titre abrégé: Nat Commun
Pays: England
ID NLM: 101528555
Informations de publication
Date de publication:
22 07 2019
22 07 2019
Historique:
received:
24
01
2019
accepted:
24
06
2019
entrez:
24
7
2019
pubmed:
25
7
2019
medline:
18
12
2019
Statut:
epublish
Résumé
The mass spectrometry (MS)-based analysis of free polysaccharides and glycans released from proteins, lipids and proteoglycans increasingly relies on databases and software. Here, we review progress in the bioinformatics analysis of protein-released N- and O-linked glycans (N- and O-glycomics) and propose an e-infrastructure to overcome current deficits in data and experimental transparency. This workflow enables the standardized submission of MS-based glycomics information into the public repository UniCarb-DR. It implements the MIRAGE (Minimum Requirement for A Glycomics Experiment) reporting guidelines, storage of unprocessed MS data in the GlycoPOST repository and glycan structure registration using the GlyTouCan registry, thereby supporting the development and extension of a glycan structure knowledgebase.
Identifiants
pubmed: 31332201
doi: 10.1038/s41467-019-11131-x
pii: 10.1038/s41467-019-11131-x
pmc: PMC6796180
doi:
Substances chimiques
Glycoproteins
0
Polysaccharides
0
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Review
Langues
eng
Sous-ensembles de citation
IM
Pagination
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