An Immune Gene Expression Signature Associated With Development of Human Hepatocellular Carcinoma Identifies Mice That Respond to Chemopreventive Agents.
Animals
Anticarcinogenic Agents
/ pharmacology
Aspirin
/ pharmacology
Biomarkers, Tumor
/ genetics
Carcinoma, Hepatocellular
/ genetics
Case-Control Studies
Cell Transformation, Neoplastic
/ drug effects
Clopidogrel
/ pharmacology
Diethylnitrosamine
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Gene Regulatory Networks
Humans
Indoles
/ pharmacology
Liver Neoplasms
/ genetics
Liver Neoplasms, Experimental
/ genetics
Male
Mice, Inbred C57BL
Transcriptome
Tumor Escape
/ genetics
Tumor Microenvironment
Cancer
Cytokines
Lymphocytes
Microenvironment
Journal
Gastroenterology
ISSN: 1528-0012
Titre abrégé: Gastroenterology
Pays: United States
ID NLM: 0374630
Informations de publication
Date de publication:
11 2019
11 2019
Historique:
received:
28
01
2019
revised:
02
07
2019
accepted:
17
07
2019
pubmed:
26
7
2019
medline:
20
12
2019
entrez:
26
7
2019
Statut:
ppublish
Résumé
Cirrhosis and chronic inflammation precede development of hepatocellular carcinoma (HCC) in approximately 80% of cases. We investigated immune-related gene expression patterns in liver tissues surrounding early-stage HCCs and chemopreventive agents that might alter these patterns to prevent liver tumorigenesis. We analyzed gene expression profiles of nontumor liver tissues from 392 patients with early-stage HCC (training set, N = 167 and validation set, N = 225) and liver tissue from patients with cirrhosis without HCC (N = 216, controls) to identify changes in expression of genes that regulate the immune response that could contribute to hepatocarcinogenesis. We defined 172 genes as markers for this deregulated immune response, which we called the immune-mediated cancer field (ICF). We analyzed the expression data of liver tissues from 216 patients with cirrhosis without HCC and investigated the association between this gene expression signature and development of HCC and outcomes of patients (median follow-up, 10 years). Human liver tissues were also analyzed by histology. C57BL/6J mice were given a single injection of diethylnitrosamine (DEN) followed by weekly doses of carbon tetrachloride to induce liver fibrosis and tumorigenesis. Mice were then orally given the multiple tyrosine inhibitor nintedanib or vehicle (controls); liver tissues were collected and histology, transcriptome, and protein analyses were performed. We also analyzed transcriptomes of liver tissues collected from mice on a choline-deficient high-fat diet, which developed chronic liver inflammation and tumors, orally given aspirin and clopidogrel or the anti-inflammatory agent sulindac vs mice on a chow (control) diet. We found the ICF gene expression pattern in 50% of liver tissues from patients with cirrhosis without HCC and in 60% of nontumor liver tissues from patients with early-stage HCC. The liver tissues with the ICF gene expression pattern had 3 different features: increased numbers of effector T cells; increased expression of genes that suppress the immune response and activation of transforming growth factor β signaling; or expression of genes that promote inflammation and activation of interferon gamma signaling. Patients with cirrhosis and liver tissues with the immunosuppressive profile (10% of cases) had a higher risk of HCC (hazard ratio, 2.41; 95% confidence interval, 1.21-4.80). Mice with chemically induced fibrosis or diet-induced steatohepatitis given nintedanib or aspirin and clopidogrel down-regulated the ICF gene expression pattern in liver and developed fewer and smaller tumors than mice given vehicle. We identified an immune-related gene expression pattern in liver tissues of patients with early-stage HCC, called the ICF, that is associated with risk of HCC development in patients with cirrhosis. Administration of nintedanib or aspirin and clopidogrel to mice with chronic liver inflammation caused loss of this gene expression pattern and development of fewer and smaller liver tumors. Agents that alter immune regulatory gene expression patterns associated with carcinogenesis might be tested as chemopreventive agents in patients with cirrhosis.
Sections du résumé
BACKGROUND & AIMS
Cirrhosis and chronic inflammation precede development of hepatocellular carcinoma (HCC) in approximately 80% of cases. We investigated immune-related gene expression patterns in liver tissues surrounding early-stage HCCs and chemopreventive agents that might alter these patterns to prevent liver tumorigenesis.
METHODS
We analyzed gene expression profiles of nontumor liver tissues from 392 patients with early-stage HCC (training set, N = 167 and validation set, N = 225) and liver tissue from patients with cirrhosis without HCC (N = 216, controls) to identify changes in expression of genes that regulate the immune response that could contribute to hepatocarcinogenesis. We defined 172 genes as markers for this deregulated immune response, which we called the immune-mediated cancer field (ICF). We analyzed the expression data of liver tissues from 216 patients with cirrhosis without HCC and investigated the association between this gene expression signature and development of HCC and outcomes of patients (median follow-up, 10 years). Human liver tissues were also analyzed by histology. C57BL/6J mice were given a single injection of diethylnitrosamine (DEN) followed by weekly doses of carbon tetrachloride to induce liver fibrosis and tumorigenesis. Mice were then orally given the multiple tyrosine inhibitor nintedanib or vehicle (controls); liver tissues were collected and histology, transcriptome, and protein analyses were performed. We also analyzed transcriptomes of liver tissues collected from mice on a choline-deficient high-fat diet, which developed chronic liver inflammation and tumors, orally given aspirin and clopidogrel or the anti-inflammatory agent sulindac vs mice on a chow (control) diet.
RESULTS
We found the ICF gene expression pattern in 50% of liver tissues from patients with cirrhosis without HCC and in 60% of nontumor liver tissues from patients with early-stage HCC. The liver tissues with the ICF gene expression pattern had 3 different features: increased numbers of effector T cells; increased expression of genes that suppress the immune response and activation of transforming growth factor β signaling; or expression of genes that promote inflammation and activation of interferon gamma signaling. Patients with cirrhosis and liver tissues with the immunosuppressive profile (10% of cases) had a higher risk of HCC (hazard ratio, 2.41; 95% confidence interval, 1.21-4.80). Mice with chemically induced fibrosis or diet-induced steatohepatitis given nintedanib or aspirin and clopidogrel down-regulated the ICF gene expression pattern in liver and developed fewer and smaller tumors than mice given vehicle.
CONCLUSIONS
We identified an immune-related gene expression pattern in liver tissues of patients with early-stage HCC, called the ICF, that is associated with risk of HCC development in patients with cirrhosis. Administration of nintedanib or aspirin and clopidogrel to mice with chronic liver inflammation caused loss of this gene expression pattern and development of fewer and smaller liver tumors. Agents that alter immune regulatory gene expression patterns associated with carcinogenesis might be tested as chemopreventive agents in patients with cirrhosis.
Identifiants
pubmed: 31344396
pii: S0016-5085(19)41121-9
doi: 10.1053/j.gastro.2019.07.028
pmc: PMC6815707
mid: NIHMS1535361
pii:
doi:
Substances chimiques
Anticarcinogenic Agents
0
Biomarkers, Tumor
0
Indoles
0
Diethylnitrosamine
3IQ78TTX1A
Clopidogrel
A74586SNO7
nintedanib
G6HRD2P839
Aspirin
R16CO5Y76E
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
1383-1397.e11Subventions
Organisme : Cancer Research UK
ID : 26813
Pays : United Kingdom
Organisme : NCI NIH HHS
ID : P30 CA196521
Pays : United States
Organisme : Cancer Research UK
ID : C9380/A26813
Pays : United Kingdom
Informations de copyright
Copyright © 2019 AGA Institute. Published by Elsevier Inc. All rights reserved.
Références
Gastroenterology. 2013 May;144(5):1024-30
pubmed: 23333348
Cell. 2015 Jan 15;160(1-2):48-61
pubmed: 25594174
Cancer Cell. 2014 Oct 13;26(4):549-64
pubmed: 25314080
Oncology. 2005;69 Suppl 3:4-10
pubmed: 16301830
Clin Cancer Res. 2009 Feb 1;15(3):778-87
pubmed: 19188147
PLoS Med. 2014 Dec 23;11(12):e1001770
pubmed: 25536056
Bioinformatics. 2015 Sep 15;31(18):3069-71
pubmed: 25990557
Nat Rev Clin Oncol. 2018 Oct;15(10):599-616
pubmed: 30061739
PLoS One. 2014 Feb 07;9(2):e88309
pubmed: 24516633
Sci Rep. 2017 Mar 06;7:43446
pubmed: 28262670
Immunity. 2016 Jan 19;44(1):194-206
pubmed: 26795250
Cell. 2011 Mar 4;144(5):646-74
pubmed: 21376230
Proc Natl Acad Sci U S A. 2004 Mar 23;101(12):4164-9
pubmed: 15016911
Nat Genet. 2006 May;38(5):500-1
pubmed: 16642009
Cancer Res. 2008 Aug 15;68(16):6779-88
pubmed: 18701503
Nat Methods. 2015 May;12(5):453-7
pubmed: 25822800
Gastroenterology. 2017 Oct;153(4):996-1005.e1
pubmed: 28642197
Gastroenterology. 2018 Aug;155(2):411-421.e4
pubmed: 29655836
Gut. 2016 Oct;65(10):1754-64
pubmed: 26045137
Mod Pathol. 2015 Jan;28(1):14-29
pubmed: 24925058
Hepatology. 2015 Aug;62(2):481-95
pubmed: 25833323
Ann Intern Med. 2013 Mar 5;158(5 Pt 1):329-37
pubmed: 23460056
Cancer Res. 2008 Jun 15;68(12):4774-82
pubmed: 18559524
Hepatology. 2015 Jun;61(6):1945-56
pubmed: 25645722
N Engl J Med. 2014 May 29;370(22):2071-82
pubmed: 24836310
Hepatology. 2005 Feb;41(2):307-14
pubmed: 15660382
Gastroenterology. 2017 Sep;153(3):812-826
pubmed: 28624577
Immunity. 2018 Apr 17;48(4):812-830.e14
pubmed: 29628290
Cell Mol Gastroenterol Hepatol. 2015 Jul 1;1(4):406-419
pubmed: 26213712
Cancer Discov. 2014 Jun;4(6):730-43
pubmed: 24687604
Transplantation. 2007 Nov 27;84(10):1262-71
pubmed: 18049111
Nat Rev Gastroenterol Hepatol. 2018 Sep;15(9):536-554
pubmed: 29904153
Hepatology. 2014 Apr;59(4):1577-90
pubmed: 24677197
Nat Med. 2019 Apr;25(4):641-655
pubmed: 30936549
J Hepatol. 2018 Jul;69(1):182-236
pubmed: 29628281
Cell Rep. 2017 Jan 3;18(1):248-262
pubmed: 28052254
J Clin Invest. 1992 Jul;90(1):196-203
pubmed: 1634608
Nature. 2002 Dec 19-26;420(6917):860-7
pubmed: 12490959
Clin Cancer Res. 2019 Apr 1;25(7):2021-2023
pubmed: 30617138
N Engl J Med. 2008 Nov 6;359(19):1995-2004
pubmed: 18923165
Immunity. 2013 Oct 17;39(4):782-95
pubmed: 24138885
Nat Immunol. 2015 Dec;16(12):1235-44
pubmed: 26502405
J Hepatol. 2015 Jun;62(6):1420-9
pubmed: 25733155
Cancer Cell. 2012 Apr 17;21(4):504-16
pubmed: 22516259
Cancer Cell. 2016 Dec 12;30(6):879-890
pubmed: 27960085
J Hepatol. 2018 Mar;68(3):526-549
pubmed: 28989095
CA Cancer J Clin. 2018 Nov;68(6):394-424
pubmed: 30207593
Gastroenterology. 2013 Mar;144(3):512-27
pubmed: 23313965
Ann Surg Oncol. 2006 Jul;13(7):947-54
pubmed: 16788756
Nat Rev Dis Primers. 2016 Apr 14;2:16018
pubmed: 27158749
Br J Surg. 2004 Oct;91(10):1354-60
pubmed: 15376182
J Hepatol. 2015 Feb;62(2):363-70
pubmed: 25195548