Early detection of unilateral ureteral obstruction by desorption electrospray ionization mass spectrometry.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
29 07 2019
Historique:
received: 13 05 2019
accepted: 16 07 2019
entrez: 31 7 2019
pubmed: 31 7 2019
medline: 27 10 2020
Statut: epublish

Résumé

Desorption electrospray ionization mass spectrometry (DESI-MS) is an emerging analytical tool for rapid in situ assessment of metabolomic profiles on tissue sections without tissue pretreatment or labeling. We applied DESI-MS to identify candidate metabolic biomarkers associated with kidney injury at the early stage. DESI-MS was performed on sections of kidneys from 80 mice over a time course following unilateral ureteral obstruction (UUO) and compared to sham controls. A predictive model of renal damage was constructed using the LASSO (least absolute shrinkage and selection operator) method. Levels of lipid and small metabolites were significantly altered and glycerophospholipids comprised a significant fraction of altered species. These changes correlate with altered expression of lipid metabolic genes, with most genes showing decreased expression. However, rapid upregulation of PG(22:6/22:6) level appeared to be a hitherto unknown feature of the metabolic shift observed in UUO. Using LASSO and SAM (significance analysis of microarrays), we identified a set of well-measured metabolites that accurately predicted UUO-induced renal damage that was detectable by 12 h after UUO, prior to apparent histological changes. Thus, DESI-MS could serve as a useful adjunct to histology in identifying renal damage and demonstrates early and broad changes in membrane associated lipids.

Identifiants

pubmed: 31358807
doi: 10.1038/s41598-019-47396-x
pii: 10.1038/s41598-019-47396-x
pmc: PMC6662848
doi:

Substances chimiques

Biomarkers 0
Lipids 0

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Pagination

11007

Subventions

Organisme : NIDDK NIH HHS
ID : R01 DK101736
Pays : United States

Références

Kidney Int. 1989 Jun;35(6):1315-9
pubmed: 2770111
PLoS Med. 2016 Aug 30;13(8):e1002108
pubmed: 27575375
Proc Natl Acad Sci U S A. 2015 May 26;112(21):6539-44
pubmed: 25964345
Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6347-6352
pubmed: 29866838
Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15184-9
pubmed: 25246570
Sci Rep. 2017 Feb 03;7:41954
pubmed: 28157191
Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):6700-6705
pubmed: 28607048
Nephrol Dial Transplant. 1994;9(9):1255-9
pubmed: 7816285
Kidney Int. 2012 Aug;82(4):428-35
pubmed: 22513823
Biochem Biophys Res Commun. 2018 Jan 29;496(1):140-146
pubmed: 29307833
Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2436-41
pubmed: 24550265
Adv Clin Chem. 2018;85:91-113
pubmed: 29655463
Kidney Int. 2018 Jan;93(1):27-40
pubmed: 29291820
PLoS One. 2014 Sep 05;9(9):e106647
pubmed: 25191961
Anal Chem. 2013 May 7;85(9):4259-62
pubmed: 23560736
Toxicol Appl Pharmacol. 2008 Dec 1;233(2):220-6
pubmed: 18834896
J Biosci. 2018 Sep;43(4):731-738
pubmed: 30207318
Am J Physiol Renal Physiol. 2018 Jul 1;315(1):F16-F26
pubmed: 29488389
Anal Chem. 2018 Oct 2;90(19):11324-11332
pubmed: 30170496
Am J Pathol. 2006 Oct;169(4):1107-17
pubmed: 17003471
J Clin Invest. 2018 Jul 2;128(7):2724-2731
pubmed: 30108196
Biochim Biophys Acta. 2011 Nov;1811(11):946-60
pubmed: 21645635
Mass Spectrom Rev. 2013 May-Jun;32(3):218-43
pubmed: 22996621
Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3334-3339
pubmed: 28292895
Sci Rep. 2016 Jun 03;6:27194
pubmed: 27256510
Kidney Int. 1991 Jan;39(1):169-83
pubmed: 2002630
Exp Mol Pathol. 2011 Oct;91(2):614-21
pubmed: 21798258
Faraday Discuss. 2011;149:247-67; discussion 333-56
pubmed: 21413184
Mol Cell Proteomics. 2016 Aug;15(8):2607-15
pubmed: 27215552
Chem Biol Interact. 2018 Dec 25;296:229-239
pubmed: 30339777
Anal Bioanal Chem. 2016 Apr;408(10):2607-19
pubmed: 26873208
Clin Biochem. 2013 Mar;46(4-5):346-53
pubmed: 23195136
Kidney Int. 2014 Jan;85(1):103-11
pubmed: 24048377
Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):5116-21
pubmed: 11309499
Anal Chem. 2017 Jan 17;89(2):1369-1372
pubmed: 28194988
Korean J Urol. 2012 May;53(5):360-7
pubmed: 22670197
Am J Nephrol. 2016;43(1):1-19
pubmed: 26844777
J Proteome Res. 2017 Aug 4;16(8):2877-2886
pubmed: 28627174
J Urol. 2012 Sep;188(3):1033-41
pubmed: 22819101
Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):4300-4305
pubmed: 28400509
Clin Kidney J. 2018 Jun;11(3):330-336
pubmed: 29988286
Mol Biosyst. 2012 Feb;8(2):595-601
pubmed: 22027911
Stat Med. 1997 Feb 28;16(4):385-95
pubmed: 9044528
J Lipid Res. 2014 Mar;55(3):561-72
pubmed: 24371263

Auteurs

Shibdas Banerjee (S)

Department of Chemistry, Stanford University, Stanford, CA, 94305, USA.
Department of Chemistry, Indian Institute of Science Education and Research Tirupati, Tirupati, 517507, India.

Anny Chuu-Yun Wong (AC)

Department of Urology, Stanford University School of Medicine, Stanford, CA, 94305, USA.

Xin Yan (X)

Department of Chemistry, Stanford University, Stanford, CA, 94305, USA.

Bo Wu (B)

Department of Urology, Stanford University School of Medicine, Stanford, CA, 94305, USA.

Hongjuan Zhao (H)

Department of Urology, Stanford University School of Medicine, Stanford, CA, 94305, USA.

Robert J Tibshirani (RJ)

Departments of Biomedical Data Sciences, and of Statistics, Stanford University, Stanford, CA, 94305, USA.

Richard N Zare (RN)

Department of Chemistry, Stanford University, Stanford, CA, 94305, USA. zare@stanford.edu.

James D Brooks (JD)

Department of Urology, Stanford University School of Medicine, Stanford, CA, 94305, USA. jdbrooks@stanford.edu.

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Classifications MeSH