Genome-wide screening of mouse knockouts reveals novel genes required for normal integumentary and oculocutaneous structure and function.


Journal

Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288

Informations de publication

Date de publication:
01 08 2019
Historique:
received: 23 10 2018
accepted: 17 06 2019
entrez: 3 8 2019
pubmed: 3 8 2019
medline: 28 10 2020
Statut: epublish

Résumé

Oculocutaneous syndromes are often due to mutations in single genes. In some cases, mouse models for these diseases exist in spontaneously occurring mutations, or in mice resulting from forward mutatagenesis screens. Here we present novel genes that may be causative for oculocutaneous disease in humans, discovered as part of a genome-wide screen of knockout-mice in a targeted single-gene deletion project. The International Mouse Phenotyping Consortium (IMPC) database (data release 10.0) was interrogated for all mouse strains with integument abnormalities, which were then cross-referenced individually to identify knockouts with concomitant ocular abnormalities attributed to the same targeted gene deletion. The search yielded 307 knockout strains from unique genes with integument abnormalities, 226 of which have not been previously associated with oculocutaneous conditions. Of the 307 knockout strains with integument abnormalities, 52 were determined to have ocular changes attributed to the targeted deletion, 35 of which represent novel oculocutaneous genes. Some examples of various integument abnormalities are shown, as well as two examples of knockout strains with oculocutaneous phenotypes. Each of the novel genes provided here are potentially relevant to the pathophysiology of human integumentary, or oculocutaneous conditions, such as albinism, phakomatoses, or other multi-system syndromes. The novel genes reported here may implicate molecular pathways relevant to these human diseases and may contribute to the discovery of novel therapeutic targets.

Identifiants

pubmed: 31371754
doi: 10.1038/s41598-019-47286-2
pii: 10.1038/s41598-019-47286-2
pmc: PMC6672016
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

11211

Subventions

Organisme : NEI NIH HHS
ID : K08 EY027463
Pays : United States
Organisme : Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.)
ID : UM1OD023321
Pays : International
Organisme : NIH HHS
ID : UM1 OD023221
Pays : United States
Organisme : NHGRI NIH HHS
ID : U54 HG006364
Pays : United States
Organisme : Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.)
ID : 5UM1OD02322
Pays : International
Organisme : NIH HHS
ID : U42 OD011175
Pays : United States

Investigateurs

Steve Brown (S)
Sara Wells (S)
Ann-Marie Mallon (AM)
Arthur L Beaudet (AL)
Martin Hrabe de Angelis (MH)
Natasha Karp (N)
Bob Braun (B)
Yann Herault (Y)
Xiang Gao (X)
Yuichi Obata (Y)
Paul Flicek (P)
Terrence Meehan (T)
Helen Parkinson (H)
Damian Smedley (D)
J K Seong (JK)
Glauco Tocchini-Valentini (G)
Fabio Mammano (F)

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Auteurs

Bret A Moore (BA)

William R. Pritchard Veterinary Medical Teaching Hospital, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.

Ann M Flenniken (AM)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, M5G 1X5, Canada.

Dave Clary (D)

Department of Surgery, School of Medicine, and Mouse Biology Program, University of California Davis, Davis, CA, United States.

Ata S Moshiri (AS)

Division of Dermatology, Department of Medicine, University of Washington, Seattle, WA, United States.

Lauryl M J Nutter (LMJ)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.

Zorana Berberovic (Z)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, M5G 1X5, Canada.

Celeste Owen (C)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, M5G 1X5, Canada.

Susan Newbigging (S)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.

Hibret Adissu (H)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.

Mohammad Eskandarian (M)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, M5G 1X5, Canada.

Colin McKerlie (C)

The Centre for Phenogenomics, Toronto, ON, M5T 3H7, Canada.

Sara M Thomasy (SM)

Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
Department of Ophthalmology & Vision Science, School of Medicine, University of California Davis, Sacramento, CA, United States.

K C Kent Lloyd (KCK)

Department of Surgery, School of Medicine, and Mouse Biology Program, University of California Davis, Davis, CA, United States.

Christopher J Murphy (CJ)

Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California Davis, Davis, CA, United States.
Department of Ophthalmology & Vision Science, School of Medicine, University of California Davis, Sacramento, CA, United States.

Ala Moshiri (A)

Department of Ophthalmology & Vision Science, School of Medicine, University of California Davis, Sacramento, CA, United States. amoshiri@ucdavis.edu.

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Classifications MeSH