A nonparametric updating method to correct clinical prediction model drift.
calibration
model updating
predictive analytics
Journal
Journal of the American Medical Informatics Association : JAMIA
ISSN: 1527-974X
Titre abrégé: J Am Med Inform Assoc
Pays: England
ID NLM: 9430800
Informations de publication
Date de publication:
01 12 2019
01 12 2019
Historique:
received:
22
01
2019
revised:
01
05
2019
accepted:
27
06
2019
pubmed:
10
8
2019
medline:
17
2
2021
entrez:
10
8
2019
Statut:
ppublish
Résumé
Clinical prediction models require updating as performance deteriorates over time. We developed a testing procedure to select updating methods that minimizes overfitting, incorporates uncertainty associated with updating sample sizes, and is applicable to both parametric and nonparametric models. We describe a procedure to select an updating method for dichotomous outcome models by balancing simplicity against accuracy. We illustrate the test's properties on simulated scenarios of population shift and 2 models based on Department of Veterans Affairs inpatient admissions. In simulations, the test generally recommended no update under no population shift, no update or modest recalibration under case mix shifts, intercept correction under changing outcome rates, and refitting under shifted predictor-outcome associations. The recommended updates provided superior or similar calibration to that achieved with more complex updating. In the case study, however, small update sets lead the test to recommend simpler updates than may have been ideal based on subsequent performance. Our test's recommendations highlighted the benefits of simple updating as opposed to systematic refitting in response to performance drift. The complexity of recommended updating methods reflected sample size and magnitude of performance drift, as anticipated. The case study highlights the conservative nature of our test. This new test supports data-driven updating of models developed with both biostatistical and machine learning approaches, promoting the transportability and maintenance of a wide array of clinical prediction models and, in turn, a variety of applications relying on modern prediction tools.
Identifiants
pubmed: 31397478
pii: 5545426
doi: 10.1093/jamia/ocz127
pmc: PMC6857513
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1448-1457Informations de copyright
© The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For permissions, please email: journals.permissions@oup.com.
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