Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases.
BLAST
comparative genomics
sequence analysis
visualization
Journal
Molecular biology and evolution
ISSN: 1537-1719
Titre abrégé: Mol Biol Evol
Pays: United States
ID NLM: 8501455
Informations de publication
Date de publication:
01 12 2019
01 12 2019
Historique:
pubmed:
15
8
2019
medline:
18
2
2020
entrez:
15
8
2019
Statut:
ppublish
Résumé
Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers.
Identifiants
pubmed: 31411700
pii: 5549819
doi: 10.1093/molbev/msz185
pmc: PMC6878946
doi:
Types de publication
Evaluation Study
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
2922-2924Subventions
Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/K004204/1
Pays : United Kingdom
Informations de copyright
© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.
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