OpenMolcas: From Source Code to Insight.


Journal

Journal of chemical theory and computation
ISSN: 1549-9626
Titre abrégé: J Chem Theory Comput
Pays: United States
ID NLM: 101232704

Informations de publication

Date de publication:
12 Nov 2019
Historique:
pubmed: 12 9 2019
medline: 12 9 2019
entrez: 12 9 2019
Statut: ppublish

Résumé

In this Article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities. The paper proceeds and describes developments related to explorations of potential energy surfaces. Here we present methods for the optimization of conical intersections, the simulation of adiabatic and nonadiabatic molecular dynamics, and interfaces to tools for semiclassical and quantum mechanical nuclear dynamics. Furthermore, the Article describes features unique to simulations of spectroscopic and magnetic phenomena such as the exact semiclassical description of the interaction between light and matter, various X-ray processes, magnetic circular dichroism, and properties. Finally, the paper describes a number of built-in and add-on features to support the OpenMolcas platform with postcalculation analysis and visualization, a multiscale simulation option using frozen-density embedding theory, and new electronic and muonic basis sets.

Identifiants

pubmed: 31509407
doi: 10.1021/acs.jctc.9b00532
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

5925-5964

Subventions

Organisme : Austrian Science Fund FWF
ID : J 3935
Pays : Austria

Auteurs

Ignacio Fdez Galván (I)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.
Department of Chemistry - BMC , Uppsala University , P.O. Box 576, SE-751 23 Uppsala , Sweden.

Morgane Vacher (M)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Ali Alavi (A)

Max Planck Institut für Festkörperforschung , Heisenbergstraße 1 , 70569 Stuttgart , Germany.

Celestino Angeli (C)

Dipartimento di Scienze Chimiche e Farmaceutiche , Università di Ferrara , Via Luigi Borsari 46 , 44121 Ferrara , Italy.

Francesco Aquilante (F)

Département de Chimie Physique , Université de Genève , 30 quai Ernest-Ansermet , CH-1211 Genève 4 , Switzerland.

Jochen Autschbach (J)

Department of Chemistry , University at Buffalo, State University of New York , Buffalo , New York 14260-3000 , United States.

Jie J Bao (JJ)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Sergey I Bokarev (SI)

Institut für Physik , Universität Rostock , Albert-Einstein-Straße 23-24 , 18059 Rostock , Germany.

Nikolay A Bogdanov (NA)

Max Planck Institut für Festkörperforschung , Heisenbergstraße 1 , 70569 Stuttgart , Germany.

Rebecca K Carlson (RK)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Liviu F Chibotaru (LF)

Theory of Nanomaterials Group , University of Leuven , Celestijnenlaan 200F , Leuven 3001 , Belgium.

Joel Creutzberg (J)

Department of Physics, AlbaNova University Center , Stockholm University , SE-106 91 Stockholm , Sweden.
Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Nike Dattani (N)

Harvard Smithsonian Center for Astrophysics , Cambridge , Massachusetts 02138 , United States.

Mickaël G Delcey (MG)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Sijia S Dong (SS)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Andreas Dreuw (A)

Interdisciplinary Center for Scientific Computing , Heidelberg University , Im Neuenheimer Feld 205 A , 69120 Heidelberg , Germany.

Leon Freitag (L)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Luis Manuel Frutos (LM)

Departamento de Química Analítica, Química Física e Ingeniería Química, and Instituto de Investigación Química "Andrés M. del Río" , Universidad de Alcalá , E-28871 Alcalá de Henares, Madrid , Spain.

Laura Gagliardi (L)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Frédéric Gendron (F)

Department of Chemistry , University at Buffalo, State University of New York , Buffalo , New York 14260-3000 , United States.

Angelo Giussani (A)

Department of Chemistry , University College London , 20 Gordon Street , London WC1H 0AJ , United Kingdom.
Instituto de Ciencia Molecular , Universitat de València , Apartado 22085, ES-46071 Valencia , Spain.

Leticia González (L)

Institute of Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währinger Straße 17 , 1090 Vienna , Austria.

Gilbert Grell (G)

Institut für Physik , Universität Rostock , Albert-Einstein-Straße 23-24 , 18059 Rostock , Germany.

Meiyuan Guo (M)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Chad E Hoyer (CE)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Marcus Johansson (M)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Sebastian Keller (S)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Stefan Knecht (S)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Goran Kovačević (G)

Division of Materials Physics , Ruđer Bošković Institute , P.O.B. 180, Bijenička 54 , HR-10002 Zagreb , Croatia.

Erik Källman (E)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Giovanni Li Manni (G)

Max Planck Institut für Festkörperforschung , Heisenbergstraße 1 , 70569 Stuttgart , Germany.

Marcus Lundberg (M)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Yingjin Ma (Y)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Sebastian Mai (S)

Institute of Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währinger Straße 17 , 1090 Vienna , Austria.

João Pedro Malhado (JP)

Department of Chemistry , Imperial College London , London SW7 2AZ , United Kingdom.

Per Åke Malmqvist (PÅ)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Philipp Marquetand (P)

Institute of Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währinger Straße 17 , 1090 Vienna , Austria.

Stefanie A Mewes (SA)

Interdisciplinary Center for Scientific Computing , Heidelberg University , Im Neuenheimer Feld 205 A , 69120 Heidelberg , Germany.
Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study (NZIAS) , Massey University Albany , Private Bag 102904, Auckland 0632 , New Zealand.

Jesper Norell (J)

Department of Physics, AlbaNova University Center , Stockholm University , SE-106 91 Stockholm , Sweden.

Massimo Olivucci (M)

Department of Biotechnology, Chemistry and Pharmacy , University of Siena , via A. Moro 2 , 53100 Siena , Italy.
Department of Chemistry , Bowling Green State University , Bowling Green , Ohio 43403 , United States.
USIAS and Institut de Physique et Chimie des Matériaux de Strasbourg , Université de Strasbourg-CNRS , 67034 Strasbourg , France.

Markus Oppel (M)

Institute of Theoretical Chemistry, Faculty of Chemistry , University of Vienna , Währinger Straße 17 , 1090 Vienna , Austria.

Quan Manh Phung (QM)

Department of Chemistry , KU Leuven , Celestijnenlaan 200F , Leuven 3001 , Belgium.

Kristine Pierloot (K)

Department of Chemistry , KU Leuven , Celestijnenlaan 200F , Leuven 3001 , Belgium.

Felix Plasser (F)

Department of Chemistry , Loughborough University , Loughborough LE11 3TU , United Kingdom.

Markus Reiher (M)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Andrew M Sand (AM)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Igor Schapiro (I)

Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem , Israel.

Prachi Sharma (P)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Christopher J Stein (CJ)

Laboratorium für Physikalische Chemie , ETH Zürich , Vladimir-Prelog-Weg 2 , 8093 Zürich , Switzerland.

Lasse Kragh Sørensen (LK)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Donald G Truhlar (DG)

Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute , University of Minnesota , Minneapolis , Minnesota 55455-0431 , United States.

Mihkel Ugandi (M)

Department of Chemistry - Ångström Laboratory , Uppsala University , P.O. Box 538, SE-751 21 Uppsala , Sweden.

Liviu Ungur (L)

Department of Chemistry , National University of Singapore , 117543 Singapore.

Alessio Valentini (A)

Theoretical Physical Chemistry , Research Unit MolSys , Allée du 6 Août, 11 , 4000 Liège , Belgium.

Steven Vancoillie (S)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Valera Veryazov (V)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Oskar Weser (O)

Max Planck Institut für Festkörperforschung , Heisenbergstraße 1 , 70569 Stuttgart , Germany.

Tomasz A Wesołowski (TA)

Département de Chimie Physique , Université de Genève , 30 quai Ernest-Ansermet , CH-1211 Genève 4 , Switzerland.

Per-Olof Widmark (PO)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Sebastian Wouters (S)

Brantsandpatents , Pauline van Pottelsberghelaan 24 , 9051 Sint-Denijs-Westrem , Belgium.

Alexander Zech (A)

Département de Chimie Physique , Université de Genève , 30 quai Ernest-Ansermet , CH-1211 Genève 4 , Switzerland.

J Patrick Zobel (JP)

Division of Theoretical Chemistry, Kemicentrum , Lund University , P.O. Box 124, SE-221 00 Lund , Sweden.

Roland Lindh (R)

Department of Chemistry - BMC , Uppsala University , P.O. Box 576, SE-751 23 Uppsala , Sweden.
Uppsala Center for Computational Chemistry (UC3) , Uppsala University , P.O. Box 596, SE-751 24 Uppsala , Sweden.

Classifications MeSH