DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.


Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
01 10 2019
Historique:
received: 26 04 2019
accepted: 18 09 2019
pubmed: 2 10 2019
medline: 6 5 2020
entrez: 2 10 2019
Statut: epublish

Résumé

Quantitative behavioral measurements are important for answering questions across scientific disciplines-from neuroscience to ecology. State-of-the-art deep-learning methods offer major advances in data quality and detail by allowing researchers to automatically estimate locations of an animal's body parts directly from images or videos. However, currently available animal pose estimation methods have limitations in speed and robustness. Here, we introduce a new easy-to-use software toolkit,

Identifiants

pubmed: 31570119
doi: 10.7554/eLife.47994
pii: 47994
pmc: PMC6897514
doi:
pii:

Types de publication

Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : National Science Foundation
ID : IOS-1355061
Pays : International
Organisme : Office of Naval Research
ID : N00014-09-1-1074
Pays : International
Organisme : Office of Naval Research
ID : N00014-14-1-0635
Pays : International
Organisme : Army Research Office
ID : W911NG-11-1-0385
Pays : International
Organisme : Army Research Office
ID : W911NF14-1-0431
Pays : International
Organisme : Deutsche Forschungsgemeinschaft
ID : DFG Centre of Excellence 2117
Pays : International
Organisme : University of Konstanz
ID : Zukunftskolleg Investment Grant
Pays : International
Organisme : Ministry of Science, Research and Art Baden-Württemberg
ID : The Strukture-und Innovations fonds fur die Forschung of the State of Baden-Wurttemberg
Pays : International
Organisme : Horizon 2020 Framework Programme
ID : Marie Sklodowska-Curie grant agreement No. 748549
Pays : International
Organisme : Nvidia
ID : GPU Grant
Pays : International
Organisme : Nvidia
ID : GPU Grant
Pays : International

Informations de copyright

© 2019, Graving et al.

Déclaration de conflit d'intérêts

JG, DC, HN, LL, BK, BC No competing interests declared, IC Reviewing editor, eLife

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Auteurs

Jacob M Graving (JM)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

Daniel Chae (D)

Department of Computer Science, Princeton University, Princeton, United States.

Hemal Naik (H)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.
Chair for Computer Aided Medical Procedures, Technische Universität München, Munich, Germany.

Liang Li (L)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

Benjamin Koger (B)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

Blair R Costelloe (BR)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

Iain D Couzin (ID)

Department of Collective Behaviour, Max Planck Institute of Animal Behavior, Konstanz, Germany.
Department of Biology, University of Konstanz, Konstanz, Germany.
Centre for the Advanced Study of Collective Behaviour, University of Konstanz, Konstanz, Germany.

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Classifications MeSH