Pangenomic type III effector database of the plant pathogenic
Bacterial wilt
Ralstonia solanacearum species complex
Type III effector
Journal
PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425
Informations de publication
Date de publication:
2019
2019
Historique:
received:
13
05
2019
accepted:
25
06
2019
entrez:
4
10
2019
pubmed:
4
10
2019
medline:
4
10
2019
Statut:
epublish
Résumé
The bacterial plant pathogenic Expert genome annotation, followed by specific type III-dependent secretion, allowed us to improve our Hidden-Markov-Model and Blast profiles for the prediction of type III effectors. We curated the T3E repertoires of 12 plant pathogenic
Sections du résumé
BACKGROUND
BACKGROUND
The bacterial plant pathogenic
METHODS
METHODS
Expert genome annotation, followed by specific type III-dependent secretion, allowed us to improve our Hidden-Markov-Model and Blast profiles for the prediction of type III effectors.
RESULTS
RESULTS
We curated the T3E repertoires of 12 plant pathogenic
Identifiants
pubmed: 31579561
doi: 10.7717/peerj.7346
pii: 7346
pmc: PMC6762002
doi:
Types de publication
Journal Article
Langues
eng
Pagination
e7346Informations de copyright
© 2019 Sabbagh et al.
Déclaration de conflit d'intérêts
The authors declare that they have no competing interests.
Références
Front Plant Sci. 2017 Oct 18;8:1794
pubmed: 29093727
J Bacteriol. 2011 Aug;193(16):4261-2
pubmed: 21685279
Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2265-2273
pubmed: 30659146
BMC Genomics. 2010 Jun 15;11:379
pubmed: 20550686
Database (Oxford). 2015 Jun 27;2015:bav064
pubmed: 26120140
Microbiology. 2009 Jul;155(Pt 7):2235-44
pubmed: 19406897
Plant Pathol J. 2018 Feb;34(1):23-34
pubmed: 29422785
Methods Mol Biol. 2018;1734:201-207
pubmed: 29288456
J Bacteriol. 2010 Sep;192(17):4474-88
pubmed: 20601478
Mol Plant Microbe Interact. 1998 Jul;11(7):659-67
pubmed: 9650298
Genome Announc. 2015 Oct 01;3(5):null
pubmed: 26430032
Mol Plant Pathol. 2012 Aug;13(6):614-29
pubmed: 22672649
Nature. 2002 Jan 31;415(6871):497-502
pubmed: 11823852
Science. 2014 Mar 28;343(6178):1509-12
pubmed: 24625928
ISME J. 2012 May;6(5):961-74
pubmed: 22094345
Mol Plant Microbe Interact. 2008 Mar;21(3):361-70
pubmed: 18257685
Methods Mol Biol. 2018;1734:209-222
pubmed: 29288457
Mol Cell Proteomics. 2016 Feb;15(2):598-613
pubmed: 26637540
Plant Physiol. 2016 Jul;171(3):2223-38
pubmed: 27208280
FEMS Microbiol Rev. 2016 Nov 1;40(6):894-937
pubmed: 28201715
Plant Dis. 2018 Nov;102(11):2258-2267
pubmed: 30192708
Mol Plant Microbe Interact. 2007 Feb;20(2):159-67
pubmed: 17313167
Front Microbiol. 2015 Jun 03;6:535
pubmed: 26089818
Front Microbiol. 2019 Mar 15;10:506
pubmed: 30930881
BMC Genomics. 2013 Dec 06;14:859
pubmed: 24314259
Genome Biol. 2019 Jan 3;20(1):3
pubmed: 30606234
Mol Plant Pathol. 2013 Sep;14(7):651-62
pubmed: 23718203
Mol Plant Microbe Interact. 2019 Aug;32(8):949-960
pubmed: 30785360
Phytopathology. 2011 Jan;101(1):154-65
pubmed: 20795852
Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2549-54
pubmed: 15701698
Cell Host Microbe. 2015 Jun 10;17(6):752-62
pubmed: 26067603
Mol Biol Evol. 2017 Dec 6;:null
pubmed: 29220515
Genome Announc. 2014 May 29;2(3):null
pubmed: 24874667
BMC Bioinformatics. 2010 Mar 08;11:119
pubmed: 20211023
Front Microbiol. 2017 May 31;8:974
pubmed: 28620361
BMC Genomics. 2015 Apr 08;16:270
pubmed: 25888333
Microbiol Resour Announc. 2019 Jan 17;8(3):null
pubmed: 30687821
Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3087-103
pubmed: 24944341
PLoS One. 2011;6(9):e24356
pubmed: 21931687
Mol Plant Pathol. 2016 May;17(4):553-64
pubmed: 26300048
Environ Microbiol. 2011 Dec;13(12):3172-85
pubmed: 22050636