Evolutionary Analysis of the

GII.P17-GII.17 RdRp VP1 human norovirus molecular evolution

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2019
Historique:
received: 12 06 2019
accepted: 05 09 2019
entrez: 16 10 2019
pubmed: 16 10 2019
medline: 16 10 2019
Statut: epublish

Résumé

Human norovirus (HuNoV) GII.P17-GII.17 (Kawasaki2014 variant) reportedly emerged in 2014 and caused gastroenteritis outbreaks worldwide. To clarify the evolution of both

Identifiants

pubmed: 31611853
doi: 10.3389/fmicb.2019.02189
pmc: PMC6777354
doi:

Types de publication

Journal Article

Langues

eng

Pagination

2189

Informations de copyright

Copyright © 2019 Matsushima, Mizukoshi, Sakon, Doan, Ueki, Ogawa, Motoya, Tsukagoshi, Nakamura, Shigemoto, Yoshitomi, Okamoto-Nakagawa, Suzuki, Tsutsui, Terasoma, Takahashi, Sadamasu, Shimizu, Okabe, Nagasawa, Aso, Ishii, Kuroda, Ryo, Katayama and Kimura.

Références

Curr Top Microbiol Immunol. 2008;320:137-56
pubmed: 18268843
Bioinformatics. 2005 May 15;21(10):2531-3
pubmed: 15713735
Methods Mol Biol. 2009;537:39-64
pubmed: 19378139
Front Microbiol. 2017 Apr 25;8:705
pubmed: 28487679
Front Microbiol. 2018 Jan 18;9:1
pubmed: 29403456
Methods Mol Biol. 2014;1137:1-15
pubmed: 24573470
Mol Biol Evol. 1999 Jan;16(1):37-48
pubmed: 10331250
Infect Genet Evol. 2017 Jan;47:121-124
pubmed: 27908796
J Med Virol. 2017 Aug;89(8):1480-1484
pubmed: 28198556
PLoS Pathog. 2012;8(5):e1002705
pubmed: 22615565
Mol Biol Evol. 2018 Jan 2;:
pubmed: 29301006
Front Microbiol. 2018 Dec 18;9:3070
pubmed: 30619155
J Clin Microbiol. 2017 Jul;55(7):2208-2221
pubmed: 28490488
J Virol. 2009 Nov;83(22):11890-901
pubmed: 19759138
PLoS Pathog. 2011 Jul;7(7):e1002152
pubmed: 21811409
Nat Methods. 2012 Jul 30;9(8):772
pubmed: 22847109
PLoS One. 2014 Jun 27;9(6):e100699
pubmed: 24971993
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
Front Microbiol. 2017 Dec 05;8:2399
pubmed: 29259596
J Clin Virol. 2011 Jun;51(2):121-5
pubmed: 21514213
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Electrophoresis. 1997 Dec;18(15):2714-23
pubmed: 9504803
PLoS Med. 2015 Dec 23;12(12):e1001940
pubmed: 26701262
PLoS Pathog. 2010 Mar 26;6(3):e1000831
pubmed: 20360972
Proteins. 2003 Feb 15;50(3):437-50
pubmed: 12557186
Nat Commun. 2015 Dec 02;6:10061
pubmed: 26625712
PLoS Comput Biol. 2012;8(12):e1002829
pubmed: 23300419
J Virol. 2013 Mar;87(5):2803-13
pubmed: 23269783
Bioinformatics. 2010 Oct 1;26(19):2455-7
pubmed: 20671151
Virus Evol. 2015 May 26;1(1):vev003
pubmed: 27774277
PLoS Pathog. 2010 May 06;6(5):e1000884
pubmed: 20463813
Euro Surveill. 2015;20(35):30010
pubmed: 26530698
J Infect Dis. 2017 Dec 5;216(10):1227-1234
pubmed: 28973354
PLoS Comput Biol. 2014 Apr 10;10(4):e1003537
pubmed: 24722319
Euro Surveill. 2015 Jul 02;20(26):null
pubmed: 26159307
Emerg Infect Dis. 2017 Feb;23(2):316-319
pubmed: 28102802
Euro Surveill. 2016;21(7):pii=30141
pubmed: 26924169
Virology. 2017 Aug;508:81-89
pubmed: 28505592
mSphere. 2017 May 17;2(3):
pubmed: 28529975
Infect Genet Evol. 2017 Mar;48:1-3
pubmed: 27923768
PLoS One. 2015 May 04;10(5):e0124965
pubmed: 25938434
Nat Rev Microbiol. 2016 Jul;14(7):421-33
pubmed: 27211790
PLoS One. 2009;4(4):e5058
pubmed: 19337380
J Clin Virol. 2013 Mar;56(3):185-93
pubmed: 23218993
PeerJ. 2018 Feb 1;6:e4333
pubmed: 29404222
Mol Biol Evol. 2013 May;30(5):1196-205
pubmed: 23420840
Syst Biol. 2003 Oct;52(5):696-704
pubmed: 14530136
J Virol. 2011 Oct;85(20):10894-8
pubmed: 21849454
J Infect Dis. 2013 Dec 1;208(11):1877-87
pubmed: 23908476
PLoS One. 2013 Oct 02;8(10):e75922
pubmed: 24098406
BMC Bioinformatics. 2010 Jul 16;11:381
pubmed: 20637083
PLoS Genet. 2012;8(7):e1002764
pubmed: 22807683
J Virol. 2011 Sep;85(17):8656-66
pubmed: 21715504
Euro Surveill. 2015 Jun 18;20(24):null
pubmed: 26111236
BMC Evol Biol. 2006 Jan 03;6:1
pubmed: 16388682
J Virol. 2011 May;85(9):4057-70
pubmed: 21345963
Proteins. 2007 Nov 1;69(2):244-53
pubmed: 17623864
J Gen Virol. 2016 Oct;97(10):2620-2632
pubmed: 27543110
Mol Biol Evol. 2016 Jul;33(7):1870-4
pubmed: 27004904
J Clin Virol. 2014 Sep;61(1):9-19
pubmed: 24998424
Emerg Infect Dis. 2018 May;24(5):920-923
pubmed: 29664371
Virology. 2015 Feb;476:386-394
pubmed: 25591173
BMC Bioinformatics. 2007 Apr 04;8:116
pubmed: 17407606
Virology. 2009 Jan 20;383(2):328-37
pubmed: 19022466
PLoS One. 2016 May 05;11(5):e0154284
pubmed: 27148739
Arch Virol. 2013 Oct;158(10):2059-68
pubmed: 23615870
PLoS Pathog. 2017 Jan 19;13(1):e1006136
pubmed: 28103318
J Infect Dis. 2016 Aug 15;214(4):556-64
pubmed: 27354370
Mol Biol Evol. 2012 Sep;29(9):2157-67
pubmed: 22403239

Auteurs

Yuki Matsushima (Y)

Division of Virology, Kawasaki City Institute for Public Health, Kawasaki, Japan.

Fuminori Mizukoshi (F)

Department of Microbiology, Tochigi Prefectural Institute of Public Health and Environmental Science, Utsunomiya, Japan.

Naomi Sakon (N)

Department of Microbiology, Osaka Institute of Public Health, Osaka, Japan.

Yen Hai Doan (YH)

Department of Virology II, National Institute of Infectious Diseases, Musashimurayama, Japan.

Yo Ueki (Y)

Department of Microbiology, Miyagi Prefectural Institute of Public Health and Environment, Sendai, Japan.

Yasutaka Ogawa (Y)

Division of Virology, Saitama Institute of Public Health, Saitama, Japan.

Takumi Motoya (T)

Ibaraki Prefectural Institute of Public Health, Mito, Japan.

Hiroyuki Tsukagoshi (H)

Gunma Prefectural Institute of Public Health and Environmental Sciences, Maebashi, Japan.

Noriko Nakamura (N)

Aichi Prefectural Institute of Public Health, Kita, Japan.

Naoki Shigemoto (N)

Hiroshima Prefectural Technology Research Institute Public Health and Environment Center, Hiroshima, Japan.

Hideaki Yoshitomi (H)

Fukuoka Institute of Health and Environmental Sciences, Dazaifu, Japan.

Reiko Okamoto-Nakagawa (R)

Yamaguchi Prefectural Institute of Public Health and Environment, Yamaguchi, Japan.

Rieko Suzuki (R)

Kanagawa Prefectural Institute of Public Health, Chigasaki, Japan.

Rika Tsutsui (R)

Aomori Prefecture Public Health and Environment Center, Aomori, Japan.

Fumio Terasoma (F)

Wakayama Prefectural Research Center of Environment and Public Health, Wakayama, Japan.

Tomoko Takahashi (T)

Iwate Prefectural Research Institute for Environmental Sciences and Public Health, Morioka, Japan.

Kenji Sadamasu (K)

Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Shinjuku, Japan.

Hideaki Shimizu (H)

Division of Virology, Kawasaki City Institute for Public Health, Kawasaki, Japan.

Nobuhiko Okabe (N)

Division of Virology, Kawasaki City Institute for Public Health, Kawasaki, Japan.

Koo Nagasawa (K)

Eastern Chiba Medical Center, Togane, Japan.

Jumpei Aso (J)

Graduate School of Health Sciences, Gunma Paz University, Takasaki, Japan.
Department of Respiratory Medicine, Kyorin University School of Medicine, Mitaka, Japan.

Haruyuki Ishii (H)

Department of Respiratory Medicine, Kyorin University School of Medicine, Mitaka, Japan.

Makoto Kuroda (M)

Pathogen Genomics Center, National Institute of Infectious Diseases, Musashimurayama, Japan.

Akihide Ryo (A)

Department of Microbiology, Yokohama City University, Graduate School of Medicine, Yokohama, Japan.

Kazuhiko Katayama (K)

Laboratory of Viral Infection I, Kitasato Institute for Life Sciences, Graduate School of Infection Control Sciences, Kitasato University, Minato, Japan.

Hirokazu Kimura (H)

Graduate School of Health Sciences, Gunma Paz University, Takasaki, Japan.
Department of Microbiology, Yokohama City University, Graduate School of Medicine, Yokohama, Japan.

Classifications MeSH