Classification of Multiple DNA Dyes Based on Inhibition Effects on Real-Time Loop-Mediated Isothermal Amplification (LAMP): Prospect for Point of Care Setting.

DNA dye Salmonella classification inhibitory effects loop-mediated isothermal amplification (LAMP) real-time LAMP

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2019
Historique:
received: 02 07 2019
accepted: 11 09 2019
entrez: 5 11 2019
pubmed: 5 11 2019
medline: 5 11 2019
Statut: epublish

Résumé

LAMP has received great interest and is widely utilized in life sciences for nucleic acid analysis. To monitor a real-time LAMP assay, a fluorescence DNA dye is an indispensable component and therefore the selection of a suitable dye for real-time LAMP is a need. To aid this selection, we investigated the inhibition effects of twenty-three DNA dyes on real-time LAMP. Threshold time (T

Identifiants

pubmed: 31681184
doi: 10.3389/fmicb.2019.02234
pmc: PMC6803449
doi:

Types de publication

Journal Article

Langues

eng

Pagination

2234

Informations de copyright

Copyright © 2019 Quyen, Ngo, Bang, Madsen and Wolff.

Références

Clin Microbiol Rev. 2006 Jan;19(1):165-256
pubmed: 16418529
Nucleic Acids Res. 2000 Jun 15;28(12):E63
pubmed: 10871386
Appl Microbiol Biotechnol. 2015 Sep;99(18):7711-22
pubmed: 26227406
FEMS Microbiol Lett. 2005 Dec 1;253(1):155-61
pubmed: 16242860
Lab Chip. 2015 Apr 21;15(8):1898-904
pubmed: 25715949
Anal Biochem. 2005 May 1;340(1):24-34
pubmed: 15802126
J Phys Chem B. 2013 Oct 10;117(40):12000-6
pubmed: 24079271
Clin Chem. 2009 Apr;55(4):611-22
pubmed: 19246619
Anal Biochem. 1999 Mar 15;268(2):278-88
pubmed: 10075818
BMC Biotechnol. 2011 Apr 18;11:41
pubmed: 21501492
Biotechniques. 2016 Jul 01;61(1):20-5
pubmed: 27401670
Biomed Microdevices. 2012 Aug;14(4):769-78
pubmed: 22566273
J Microbiol Methods. 2015 Feb;109:74-8
pubmed: 25533219
Environ Sci Technol. 2014 Dec 2;48(23):13855-63
pubmed: 25360694
Biomol Detect Quantif. 2014 Nov 22;2:4-10
pubmed: 27896139
BMC Microbiol. 2010 Feb 10;10:41
pubmed: 20146814
Expert Rev Mol Diagn. 2014 Sep;14(7):827-43
pubmed: 25052202
Virol J. 2014 Apr 29;11:76
pubmed: 24775810
Arch Virol. 2012 Aug;157(8):1481-8
pubmed: 22573187
BMC Biotechnol. 2007 Nov 09;7:76
pubmed: 17996102
Appl Environ Microbiol. 2011 Jul;77(14):4754-69
pubmed: 21602365
J Microbiol Methods. 2015 Dec;119:223-7
pubmed: 26554941
BMC Res Notes. 2018 Feb 1;11(1):93
pubmed: 29391052
Mutat Res. 2010 Jun 17;699(1-2):1-4
pubmed: 20403457
Mol Cell Probes. 2017 Apr;32:24-32
pubmed: 27871797
Appl Environ Microbiol. 2009 Mar;75(6):1597-603
pubmed: 19139242
Org Biomol Chem. 2015 Sep 28;13(36):9477-84
pubmed: 26257246
Front Pediatr. 2018 Mar 12;6:57
pubmed: 29594087
PLoS Negl Trop Dis. 2012;6(6):e1572
pubmed: 22745836
Biomed Microdevices. 2011 Oct;13(5):929-37
pubmed: 21720851
Biophys J. 2010 Nov 3;99(9):3010-9
pubmed: 21044599
Front Microbiol. 2019 Feb 04;10:25
pubmed: 30778337
Clin Biochem. 2015 Jun;48(9):609-16
pubmed: 25641335
Int J Mol Sci. 2015 Mar 03;16(3):4786-99
pubmed: 25741765
J Biotechnol. 2006 Oct 1;125(4):484-91
pubmed: 16790287
PLoS One. 2013;8(1):e54986
pubmed: 23349994
Nucleic Acids Res. 2003 Nov 1;31(21):6235-42
pubmed: 14576311
PLoS One. 2015 Feb 12;10(2):e0117852
pubmed: 25675344
J Biochem Biophys Methods. 2004 May 31;59(2):145-57
pubmed: 15163526
Nucleic Acids Res. 2006 Mar 17;34(5):e43
pubmed: 16547198
J Clin Virol. 2008 Apr;41(4):270-6
pubmed: 18296109
Nucleic Acids Res. 2007;35(19):e127
pubmed: 17897966
J Biosci. 2007 Mar;32(2):229-39
pubmed: 17435315

Auteurs

Than Linh Quyen (TL)

Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU-Bioengineering), Lyngby, Denmark.

Tien Anh Ngo (TA)

Laboratory of Applied Micro and Nanotechnology (LAMINATE), National Food Institute, Technical University of Denmark (DTU-Food), Lyngby, Denmark.

Dang Duong Bang (DD)

Laboratory of Applied Micro and Nanotechnology (LAMINATE), National Food Institute, Technical University of Denmark (DTU-Food), Lyngby, Denmark.

Mogens Madsen (M)

Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU-Bioengineering), Lyngby, Denmark.

Anders Wolff (A)

Department of Biotechnology and Biomedicine, Technical University of Denmark (DTU-Bioengineering), Lyngby, Denmark.

Classifications MeSH