Association of Genetic Variants With Primary Open-Angle Glaucoma Among Individuals With African Ancestry.


Journal

JAMA
ISSN: 1538-3598
Titre abrégé: JAMA
Pays: United States
ID NLM: 7501160

Informations de publication

Date de publication:
05 11 2019
Historique:
entrez: 6 11 2019
pubmed: 7 11 2019
medline: 23 11 2019
Statut: ppublish

Résumé

Primary open-angle glaucoma presents with increased prevalence and a higher degree of clinical severity in populations of African ancestry compared with European or Asian ancestry. Despite this, individuals of African ancestry remain understudied in genomic research for blinding disorders. To perform a genome-wide association study (GWAS) of African ancestry populations and evaluate potential mechanisms of pathogenesis for loci associated with primary open-angle glaucoma. A 2-stage GWAS with a discovery data set of 2320 individuals with primary open-angle glaucoma and 2121 control individuals without primary open-angle glaucoma. The validation stage included an additional 6937 affected individuals and 14 917 unaffected individuals using multicenter clinic- and population-based participant recruitment approaches. Study participants were recruited from Ghana, Nigeria, South Africa, the United States, Tanzania, Britain, Cameroon, Saudi Arabia, Brazil, the Democratic Republic of the Congo, Morocco, Peru, and Mali from 2003 to 2018. Individuals with primary open-angle glaucoma had open iridocorneal angles and displayed glaucomatous optic neuropathy with visual field defects. Elevated intraocular pressure was not included in the case definition. Control individuals had no elevated intraocular pressure and no signs of glaucoma. Genetic variants associated with primary open-angle glaucoma. Presence of primary open-angle glaucoma. Genome-wide significance was defined as P < 5 × 10-8 in the discovery stage and in the meta-analysis of combined discovery and validation data. A total of 2320 individuals with primary open-angle glaucoma (mean [interquartile range] age, 64.6 [56-74] years; 1055 [45.5%] women) and 2121 individuals without primary open-angle glaucoma (mean [interquartile range] age, 63.4 [55-71] years; 1025 [48.3%] women) were included in the discovery GWAS. The GWAS discovery meta-analysis demonstrated association of variants at amyloid-β A4 precursor protein-binding family B member 2 (APBB2; chromosome 4, rs59892895T>C) with primary open-angle glaucoma (odds ratio [OR], 1.32 [95% CI, 1.20-1.46]; P = 2 × 10-8). The association was validated in an analysis of an additional 6937 affected individuals and 14 917 unaffected individuals (OR, 1.15 [95% CI, 1.09-1.21]; P < .001). Each copy of the rs59892895*C risk allele was associated with increased risk of primary open-angle glaucoma when all data were included in a meta-analysis (OR, 1.19 [95% CI, 1.14-1.25]; P = 4 × 10-13). The rs59892895*C risk allele was present at appreciable frequency only in African ancestry populations. In contrast, the rs59892895*C risk allele had a frequency of less than 0.1% in individuals of European or Asian ancestry. In this genome-wide association study, variants at the APBB2 locus demonstrated differential association with primary open-angle glaucoma by ancestry. If validated in additional populations this finding may have implications for risk assessment and therapeutic strategies.

Identifiants

pubmed: 31688885
pii: 2753899
doi: 10.1001/jama.2019.16161
pmc: PMC6865235
doi:

Substances chimiques

APBB2 protein, human 0
Adaptor Proteins, Signal Transducing 0
Amyloid beta-Peptides 0

Types de publication

Journal Article Multicenter Study Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Validation Study

Langues

eng

Sous-ensembles de citation

IM

Pagination

1682-1691

Subventions

Organisme : NIDDK NIH HHS
ID : U01 DK105556
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001881
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY014104
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY025580
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY021818
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY020894
Pays : United States
Organisme : NHGRI NIH HHS
ID : U54 HG009826
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY015473
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK107786
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007337
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK066358
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK110113
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY022589
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK087914
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG004728
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY023512
Pays : United States
Organisme : NIA NIH HHS
ID : R01 AG063689
Pays : United States
Organisme : NEI NIH HHS
ID : R21 EY028671
Pays : United States
Organisme : NIA NIH HHS
ID : P30 AG028377
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY010008
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK053591
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY027004
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK070941
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007417
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY019869
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY023704
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY022305
Pays : United States
Organisme : RRD VA
ID : I01 RX001481
Pays : United States
Organisme : NEI NIH HHS
ID : R21 EY029609
Pays : United States
Organisme : NIDDK NIH HHS
ID : P30 DK063491
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK101855
Pays : United States

Commentaires et corrections

Type : CommentIn

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Auteurs

Michael A Hauser (MA)

Department of Medicine, Duke University, Durham, North Carolina.
Department of Ophthalmology, Duke University, Durham, North Carolina.
Singapore Eye Research Institute, Singapore.
Duke-NUS Medical School, Signapore.

R Rand Allingham (RR)

Department of Ophthalmology, Duke University, Durham, North Carolina.
Singapore Eye Research Institute, Singapore.
Duke-NUS Medical School, Signapore.

Tin Aung (T)

Singapore Eye Research Institute, Singapore.
Duke-NUS Medical School, Signapore.
Singapore National Eye Center, Singapore.
Department of Ophthalmology, Young Loo Lin School of Medicine, Singapore.

Carly J Van Der Heide (CJ)

Carver College of Medicine, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City.

Kent D Taylor (KD)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California.
Department of Pediatrics, Harbor-University of California, Los Angeles Medical Center, Torrance.

Jerome I Rotter (JI)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California.

Shih-Hsiu J Wang (SJ)

Department of Pathology, Duke University, Durham, North Carolina.

Pieter W M Bonnemaijer (PWM)

Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands.
Rotterdam Eye Hospital, Rotterdam, the Netherlands.
Department of Ophthalmology, Erasmus MC, Rotterdam, the Netherlands.

Susan E Williams (SE)

Division of Ophthalmology, Department of Neurosciences, University of the Witwatersrand, Johannesburg, South Africa.

Sadiq M Abdullahi (SM)

National Eye Centre, Kaduna, Nigeria.

Khaled K Abu-Amero (KK)

Department of Ophthalmology, College of Medicine, King Saud University, Riyadh, Saudi Arabia.

Michael G Anderson (MG)

Carver College of Medicine, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City.

Stephen Akafo (S)

Unit of Ophthalmology, Department of Surgery, University of Ghana Medical School, Accra, Ghana.

Mahmoud B Alhassan (MB)

National Eye Centre, Kaduna, Nigeria.

Ifeoma Asimadu (I)

Department of Ophthalmology, ESUT Teaching Hospital Parklane, Enugu, Nigeria.

Radha Ayyagari (R)

Shiley Eye Institute, Hamilton Glaucoma Center, Department of Ophthalmology, University of California, San Diego, La Jolla.

Saydou Bakayoko (S)

Institut d'Ophtalmologie Tropicale de l'Afrique, Bamako, Mali.
Université des Sciences des Techniques et des Technologies de Bamako, Bamako, Mali.

Prisca Biangoup Nyamsi (PB)

Service Spécialisé d'ophtalmologie, Hôpital Militaire de Région No1 de Yaoundé, Yaoundé, Cameroun.

Donald W Bowden (DW)

Center for Diabetes Research, Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina.

William C Bromley (WC)

Center for Human Genetics, Bar Harbor, Maine.

Donald L Budenz (DL)

Department of Ophthalmology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.

Trevor R Carmichael (TR)

Division of Ophthalmology, Department of Neurosciences, University of the Witwatersrand, Johannesburg, South Africa.

Pratap Challa (P)

Department of Ophthalmology, Duke University, Durham, North Carolina.

Yii-Der Ida Chen (YI)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California.
Department of Pediatrics, Harbor-University of California, Los Angeles Medical Center, Torrance.

Chimdi M Chuka-Okosa (CM)

University of Nigeria Teaching Hospital, Ituku Ozalla, Enugu, Nigeria.

Jessica N Cooke Bailey (JN)

Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio.
Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio.

Vital Paulino Costa (VP)

Department of Ophthalmology, Faculty of Medical Sciences, University of Campinas, Campinas, Brazil.

Dianne A Cruz (DA)

Department of Psychiatry and Behavioral Sciences, Duke University, Durham, North Carolina.

Harvey DuBiner (H)

Clayton Eye Care Center Management Inc, Marrow, Georgia.

John F Ervin (JF)

Kathleen Price Bryan Brain Bank and Biorepository, Department of Neurology, Duke University, Durham, North Carolina.

Robert M Feldman (RM)

McGovern Medical School, Ruiz Department of Ophthalmology & Visual Science, The University of Texas Health Science Center at Houston, Houston.

Miles Flamme-Wiese (M)

Carver College of Medicine, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City.

Douglas E Gaasterland (DE)

The Emmes Corporation, Rockville, Maryland.

Sarah J Garnai (SJ)

Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor.

Christopher A Girkin (CA)

Department of Ophthalmology and Visual Sciences, University of Alabama at Birmingham.

Nouhoum Guirou (N)

Institut d'Ophtalmologie Tropicale de l'Afrique, Bamako, Mali.
Université des Sciences des Techniques et des Technologies de Bamako, Bamako, Mali.

Xiuqing Guo (X)

The Institute for Translational Genomics and Population Sciences, Department of Pediatrics, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Torrance, California.

Jonathan L Haines (JL)

Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio.
Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio.

Christopher J Hammond (CJ)

Section of Academic Ophthalmology, School of Life Course Sciences, FoLSM, King's College London, London, United Kingdom.

Leon Herndon (L)

Department of Ophthalmology, Duke University, Durham, North Carolina.

Thomas J Hoffmann (TJ)

Department of Epidemiology and Biostatistics, University of California at San Francisco.
Institute for Human Genetics, University of California at San Francisco.

Christine M Hulette (CM)

Department of Pathology, Duke University, Durham, North Carolina.

Abba Hydara (A)

Sheikh Zayed Regional Eye Care Centre, Kanifing, The Gambia.

Robert P Igo (RP)

Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio.

Eric Jorgenson (E)

Division of Research, Kaiser Permanente Northern California, Oakland.

Joyce Kabwe (J)

Department of Ophthalmology, St Joseph Hospital, Kinshasa, Limete, Democratic Republic of the Congo.

Ngoy Janvier Kilangalanga (NJ)

Department of Ophthalmology, St Joseph Hospital, Kinshasa, Limete, Democratic Republic of the Congo.

Nkiru Kizor-Akaraiwe (N)

Department of Ophthalmology, ESUT Teaching Hospital Parklane, Enugu, Nigeria.
The Eye Specialists Hospital, Enugu, Nigeria.

Rachel W Kuchtey (RW)

Department of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, Tennessee.

Hasnaa Lamari (H)

Clinique Spécialisée en Ophtalmologie Mohammedia, Mohammedia, Morocco.

Zheng Li (Z)

Genome Institute of Singapore, Singapore.

Jeffrey M Liebmann (JM)

Bernard and Shirlee Brown Glaucoma Research Laboratory, Harkness Eye Institute, Columbia University Medical Center, New York, New York.

Yutao Liu (Y)

Cellular Biology and Anatomy, Augusta University, Augusta, Georgia.
James & Jean Culver Vision Discovery Institute, Augusta University, Augusta, Georgia.
Center for Biotechnology & Genomic Medicine, Augusta University, Augusta, Georgia.

Ruth J F Loos (RJF)

The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York.
The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, New York.

Monica B Melo (MB)

Center for Molecular Biology and Genetic Engineering, University of Campinas, Campinas, Brazil.

Sayoko E Moroi (SE)

Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor.

Joseph M Msosa (JM)

Lions Sight-First Eye Hospital, Kamuzu Central Hospital, Lilongwe, Malawi.

Robert F Mullins (RF)

Carver College of Medicine, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City.

Girish Nadkarni (G)

The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York.
Division of Nephrology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York.

Abdoulaye Napo (A)

Institut d'Ophtalmologie Tropicale de l'Afrique, Bamako, Mali.
Université des Sciences des Techniques et des Technologies de Bamako, Bamako, Mali.

Maggie C Y Ng (MCY)

Center for Diabetes Research, Department of Biochemistry, Wake Forest School of Medicine, Winston-Salem, North Carolina.

Hugo Freire Nunes (HF)

Center for Molecular Biology and Genetic Engineering, University of Campinas, Campinas, Brazil.

Ebenezer Obeng-Nyarkoh (E)

Center for Human Genetics, Bar Harbor, Maine.

Anthony Okeke (A)

Nigerian Navy Reference Hospital, Ojo, Lagos, Nigeria.

Suhanya Okeke (S)

Department of Ophthalmology, ESUT Teaching Hospital Parklane, Enugu, Nigeria.
The Eye Specialists Hospital, Enugu, Nigeria.

Olusegun Olaniyi (O)

National Eye Centre, Kaduna, Nigeria.

Olusola Olawoye (O)

Department of Ophthalmology, University of Ibadan, Ibadan, Nigeria.

Mariana Borges Oliveira (MB)

Center for Molecular Biology and Genetic Engineering, University of Campinas, Campinas, Brazil.

Louise R Pasquale (LR)

Department of Ophthalmology, Icahn School of Medicine at Mount Sinai, New York, New York.
Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, Massachusetts.

Rodolfo A Perez-Grossmann (RA)

Instituto de Glaucoma y Catarata, Lima, Peru.

Margaret A Pericak-Vance (MA)

John P Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.

Xue Qin (X)

Duke Molecular Physiology Institute, Duke University, Durham, North Carolina.

Michele Ramsay (M)

Sydney Brenner Institute for Molecular Bioscience, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.

Serge Resnikoff (S)

Brien Holden Vision Institute, Sydney, Australia.
School of Optometry and Vision Science, University of New South Wales, Sydney, Australia.

Julia E Richards (JE)

Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor.
Department of Epidemiology, University of Michigan, Ann Arbor.

Rui Barroso Schimiti (RB)

Hoftalon Hospital, Londrina, Brazil.

Kar Seng Sim (KS)

Genome Institute of Singapore, Singapore.

William E Sponsel (WE)

San Antonio Eye Health, San Antonio, Texas.
Eyes of Africa, Child Legacy International (CLI) Hospital, Msundwe, Malawi.

Paulo Vinicius Svidnicki (PV)

Center for Molecular Biology and Genetic Engineering, University of Campinas, Campinas, Brazil.

Alberta A H J Thiadens (AAHJ)

Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands.
Department of Ophthalmology, Erasmus MC, Rotterdam, the Netherlands.

Nkechinyere J Uche (NJ)

University of Nigeria Teaching Hospital, Ituku Ozalla, Enugu, Nigeria.
The Eye Specialists Hospital, Enugu, Nigeria.

Cornelia M van Duijn (CM)

Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands.
Nuffield Department of Public Health, University of Oxford, Oxford, United Kingdom.

José Paulo Cabral de Vasconcellos (JPC)

Department of Ophthalmology, Faculty of Medical Sciences, University of Campinas, Campinas, Brazil.

Janey L Wiggs (JL)

Harvard University Medical School, Boston, Massachusetts.
Massachusetts Eye and Ear Hospital, Boston.

Linda M Zangwill (LM)

Shiley Eye Institute, Hamilton Glaucoma Center, Department of Ophthalmology, University of California, San Diego, La Jolla.

Neil Risch (N)

Department of Epidemiology and Biostatistics, University of California at San Francisco.
Institute for Human Genetics, University of California at San Francisco.
Division of Research, Kaiser Permanente Northern California, Oakland.

Dan Milea (D)

Singapore Eye Research Institute, Singapore.
Duke-NUS Medical School, Signapore.
Singapore National Eye Center, Singapore.

Adeyinka Ashaye (A)

Department of Ophthalmology, University of Ibadan, Ibadan, Nigeria.

Caroline C W Klaver (CCW)

Department of Epidemiology, Erasmus MC, Rotterdam, the Netherlands.
Department of Ophthalmology, Erasmus MC, Rotterdam, the Netherlands.
Department of Ophthalmology, Radboud University Medical Center, Nijmegen, the Netherlands.

Robert N Weinreb (RN)

Shiley Eye Institute, Hamilton Glaucoma Center, Department of Ophthalmology, University of California, San Diego, La Jolla.

Allison E Ashley Koch (AE)

Department of Medicine, Duke University, Durham, North Carolina.

John H Fingert (JH)

Carver College of Medicine, Department of Ophthalmology and Visual Sciences, University of Iowa, Iowa City.

Chiea Chuen Khor (CC)

Singapore Eye Research Institute, Singapore.
Genome Institute of Singapore, Singapore.

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