Association of Genetic Variants With Primary Open-Angle Glaucoma Among Individuals With African Ancestry.
Adaptor Proteins, Signal Transducing
/ genetics
Aged
Amyloid beta-Peptides
/ genetics
Black People
/ genetics
Case-Control Studies
Female
Genetic Predisposition to Disease
Genome-Wide Association Study
Genotype
Glaucoma, Open-Angle
/ ethnology
Humans
Immunohistochemistry
Male
Meta-Analysis as Topic
Middle Aged
Polymorphism, Single Nucleotide
Risk Factors
Journal
JAMA
ISSN: 1538-3598
Titre abrégé: JAMA
Pays: United States
ID NLM: 7501160
Informations de publication
Date de publication:
05 11 2019
05 11 2019
Historique:
entrez:
6
11
2019
pubmed:
7
11
2019
medline:
23
11
2019
Statut:
ppublish
Résumé
Primary open-angle glaucoma presents with increased prevalence and a higher degree of clinical severity in populations of African ancestry compared with European or Asian ancestry. Despite this, individuals of African ancestry remain understudied in genomic research for blinding disorders. To perform a genome-wide association study (GWAS) of African ancestry populations and evaluate potential mechanisms of pathogenesis for loci associated with primary open-angle glaucoma. A 2-stage GWAS with a discovery data set of 2320 individuals with primary open-angle glaucoma and 2121 control individuals without primary open-angle glaucoma. The validation stage included an additional 6937 affected individuals and 14 917 unaffected individuals using multicenter clinic- and population-based participant recruitment approaches. Study participants were recruited from Ghana, Nigeria, South Africa, the United States, Tanzania, Britain, Cameroon, Saudi Arabia, Brazil, the Democratic Republic of the Congo, Morocco, Peru, and Mali from 2003 to 2018. Individuals with primary open-angle glaucoma had open iridocorneal angles and displayed glaucomatous optic neuropathy with visual field defects. Elevated intraocular pressure was not included in the case definition. Control individuals had no elevated intraocular pressure and no signs of glaucoma. Genetic variants associated with primary open-angle glaucoma. Presence of primary open-angle glaucoma. Genome-wide significance was defined as P < 5 × 10-8 in the discovery stage and in the meta-analysis of combined discovery and validation data. A total of 2320 individuals with primary open-angle glaucoma (mean [interquartile range] age, 64.6 [56-74] years; 1055 [45.5%] women) and 2121 individuals without primary open-angle glaucoma (mean [interquartile range] age, 63.4 [55-71] years; 1025 [48.3%] women) were included in the discovery GWAS. The GWAS discovery meta-analysis demonstrated association of variants at amyloid-β A4 precursor protein-binding family B member 2 (APBB2; chromosome 4, rs59892895T>C) with primary open-angle glaucoma (odds ratio [OR], 1.32 [95% CI, 1.20-1.46]; P = 2 × 10-8). The association was validated in an analysis of an additional 6937 affected individuals and 14 917 unaffected individuals (OR, 1.15 [95% CI, 1.09-1.21]; P < .001). Each copy of the rs59892895*C risk allele was associated with increased risk of primary open-angle glaucoma when all data were included in a meta-analysis (OR, 1.19 [95% CI, 1.14-1.25]; P = 4 × 10-13). The rs59892895*C risk allele was present at appreciable frequency only in African ancestry populations. In contrast, the rs59892895*C risk allele had a frequency of less than 0.1% in individuals of European or Asian ancestry. In this genome-wide association study, variants at the APBB2 locus demonstrated differential association with primary open-angle glaucoma by ancestry. If validated in additional populations this finding may have implications for risk assessment and therapeutic strategies.
Identifiants
pubmed: 31688885
pii: 2753899
doi: 10.1001/jama.2019.16161
pmc: PMC6865235
doi:
Substances chimiques
APBB2 protein, human
0
Adaptor Proteins, Signal Transducing
0
Amyloid beta-Peptides
0
Types de publication
Journal Article
Multicenter Study
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Validation Study
Langues
eng
Sous-ensembles de citation
IM
Pagination
1682-1691Subventions
Organisme : NIDDK NIH HHS
ID : U01 DK105556
Pays : United States
Organisme : NCATS NIH HHS
ID : UL1 TR001881
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY014104
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY025580
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY021818
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY020894
Pays : United States
Organisme : NHGRI NIH HHS
ID : U54 HG009826
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY015473
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK107786
Pays : United States
Organisme : NIGMS NIH HHS
ID : T32 GM007337
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK066358
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK110113
Pays : United States
Organisme : NEI NIH HHS
ID : P30 EY022589
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK087914
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG004728
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY023512
Pays : United States
Organisme : NIA NIH HHS
ID : R01 AG063689
Pays : United States
Organisme : NEI NIH HHS
ID : R21 EY028671
Pays : United States
Organisme : NIA NIH HHS
ID : P30 AG028377
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY010008
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK053591
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY027004
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK070941
Pays : United States
Organisme : NHGRI NIH HHS
ID : U01 HG007417
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY019869
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY023704
Pays : United States
Organisme : NEI NIH HHS
ID : R01 EY022305
Pays : United States
Organisme : RRD VA
ID : I01 RX001481
Pays : United States
Organisme : NEI NIH HHS
ID : R21 EY029609
Pays : United States
Organisme : NIDDK NIH HHS
ID : P30 DK063491
Pays : United States
Organisme : NIDDK NIH HHS
ID : R01 DK101855
Pays : United States
Commentaires et corrections
Type : CommentIn
Références
Nat Genet. 2016 Feb;48(2):189-94
pubmed: 26752265
JAMA. 1991 Jul 17;266(3):369-74
pubmed: 2056646
Hum Mol Genet. 2015 Jul 1;24(13):3880-92
pubmed: 25861811
Nat Genet. 2012 Jul 22;44(8):955-9
pubmed: 22820512
Hum Mol Genet. 2018 Apr 15;27(8):1486-1496
pubmed: 29452408
Ophthalmology. 2002 Jun;109(6):1047-51
pubmed: 12045042
Nat Commun. 2014 Sep 22;5:4883
pubmed: 25241763
Br J Ophthalmol. 1989 Jul;73(7):483-7
pubmed: 2788015
J Biol Chem. 2003 Dec 19;278(51):51100-7
pubmed: 14527950
Nat Genet. 2017 Jul;49(7):993-1004
pubmed: 28553957
Nat Commun. 2018 Jun 11;9(1):2278
pubmed: 29891935
Acta Neuropathol. 1991;82(4):239-59
pubmed: 1759558
Nat Genet. 2016 Feb;48(2):134-43
pubmed: 26691988
Hum Mol Genet. 2014 Dec 15;23(24):6634-43
pubmed: 25027321
Nature. 2016 Aug 17;536(7616):285-91
pubmed: 27535533
Sci Rep. 2018 Feb 15;8(1):3124
pubmed: 29449654
JAMA Ophthalmol. 2013 May;131(5):651-8
pubmed: 23538512
Nat Commun. 2017 Dec 13;8(1):2108
pubmed: 29235454
Nat Genet. 2016 May;48(5):556-62
pubmed: 27064256
Nat Genet. 2017 Jun;49(6):946-952
pubmed: 28416818
Br J Ophthalmol. 2006 Mar;90(3):262-7
pubmed: 16488940
Nat Genet. 2014 Oct;46(10):1120-1125
pubmed: 25173105
Ophthalmology. 2014 Nov;121(11):2081-90
pubmed: 24974815
Nat Genet. 2017 Aug;49(8):1255-1260
pubmed: 28628106
Nat Genet. 2018 Jun;50(6):778-782
pubmed: 29785010
Nature. 2015 Oct 1;526(7571):68-74
pubmed: 26432245
Bioinformatics. 2003 Jan;19(1):149-50
pubmed: 12499305
Am J Hum Genet. 2007 Sep;81(3):559-75
pubmed: 17701901
Nat Genet. 2014 Oct;46(10):1115-9
pubmed: 25173107
Invest Ophthalmol Vis Sci. 2014 Aug 26;55(8):5351-2
pubmed: 25159589
Alzheimers Dement. 2012 Jan;8(1):1-13
pubmed: 22265587
Ophthalmology. 2019 Jan;126(1):156-170
pubmed: 29361356
Arch Ophthalmol. 2001 Jan;119(1):89-95
pubmed: 11146731
Nat Genet. 2014 Oct;46(10):1126-1130
pubmed: 25173106
Ophthalmology. 2019 Jan;126(1):38-48
pubmed: 30352225
Nat Genet. 2018 Aug;50(8):1067-1071
pubmed: 30054594
Hum Genet. 2018 Oct;137(10):847-862
pubmed: 30317457