Advanced Evanescent-Wave Optical Biosensors for the Detection of Nucleic Acids: An Analytic Perspective.
biosensors
clinical diagnosis
epigenetics
microfluidics
nucleic acid analysis
plasmonics
silicon photonics
surface chemistry
Journal
Frontiers in chemistry
ISSN: 2296-2646
Titre abrégé: Front Chem
Pays: Switzerland
ID NLM: 101627988
Informations de publication
Date de publication:
2019
2019
Historique:
received:
13
08
2019
accepted:
10
10
2019
entrez:
12
11
2019
pubmed:
12
11
2019
medline:
12
11
2019
Statut:
epublish
Résumé
Evanescent-wave optical biosensors have become an attractive alternative for the screening of nucleic acids in the clinical context. They possess highly sensitive transducers able to perform detection of a wide range of nucleic acid-based biomarkers without the need of any label or marker. These optical biosensor platforms are very versatile, allowing the incorporation of an almost limitless range of biorecognition probes precisely and robustly adhered to the sensor surface by covalent surface chemistry approaches. In addition, their application can be further enhanced by their combination with different processes, thanks to their integration with complex and automated microfluidic systems, facilitating the development of multiplexed and user-friendly platforms. The objective of this work is to provide a comprehensive synopsis of cutting-edge analytical strategies based on these label-free optical biosensors able to deal with the drawbacks related to DNA and RNA detection, from single point mutations assays and epigenetic alterations, to bacterial infections. Several plasmonic and silicon photonic-based biosensors are described together with their most recent applications in this area. We also identify and analyse the main challenges faced when attempting to harness this technology and how several innovative approaches introduced in the last years manage those issues, including the use of new biorecognition probes, surface functionalization approaches, signal amplification and enhancement strategies, as well as, sophisticated microfluidic solutions.
Identifiants
pubmed: 31709240
doi: 10.3389/fchem.2019.00724
pmc: PMC6823211
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
724Informations de copyright
Copyright © 2019 Huertas, Calvo-Lozano, Mitchell and Lechuga.
Références
Anal Chem. 2007 Jun 15;79(12):4390-400
pubmed: 17492838
Methods Mol Biol. 2016;1392:71-82
pubmed: 26843048
Langmuir. 2008 Nov 18;24(22):13001-6
pubmed: 18947242
Biosens Bioelectron. 2015 Apr 15;66:512-9
pubmed: 25500527
Int J Antimicrob Agents. 2013 Jun;42 Suppl:S8-12
pubmed: 23664675
J Biotechnol. 2017 Oct 10;259:148-159
pubmed: 28764969
Sci Transl Med. 2010 Dec 8;2(61):61ra91
pubmed: 21148127
Mol Oncol. 2012 Dec;6(6):590-610
pubmed: 23102669
Bioconjug Chem. 2014 Mar 19;25(3):618-27
pubmed: 24559310
ACS Appl Mater Interfaces. 2017 Aug 9;9(31):25789-25795
pubmed: 28707877
Anal Bioanal Chem. 2019 Mar;411(9):1695-1702
pubmed: 30617408
Biochemistry. 2007 Aug 7;46(31):9068-79
pubmed: 17630773
Nat Rev Genet. 2014 Jan;15(1):7-21
pubmed: 24296535
Anal Chem. 2010 Apr 1;82(7):2803-10
pubmed: 20196546
Biosens Bioelectron. 2015 Apr 15;66:497-503
pubmed: 25500525
Sci Rep. 2015 Aug 10;5:12864
pubmed: 26255778
PLoS One. 2015 Oct 15;10(10):e0140468
pubmed: 26469337
Anal Chem. 2006 May 15;78(10):3316-25
pubmed: 16689532
PLoS One. 2018 Mar 16;13(3):e0194630
pubmed: 29547634
Macromol Rapid Commun. 2011 Jul 1;32(13):952-7
pubmed: 21644241
Sensors (Basel). 2015 Dec 01;15(12):30011-31
pubmed: 26633409
Oncotarget. 2017 Aug 8;8(48):83860-83871
pubmed: 29137388
Analyst. 2018 Apr 16;143(8):1758-1774
pubmed: 29560992
Biosensors (Basel). 2018 Aug 26;8(3):
pubmed: 30149679
Anal Chim Acta. 2019 Jul 4;1060:103-113
pubmed: 30902324
Biosens Bioelectron. 2016 Apr 15;78:118-125
pubmed: 26599481
Clin Immunol. 2018 Nov;196:64-71
pubmed: 29501540
Front Neurol. 2019 Feb 04;10:32
pubmed: 30778327
Curr Stem Cell Res Ther. 2012 Nov;7(6):400-6
pubmed: 22953724
J Org Chem. 2011 Jul 15;76(14):5614-27
pubmed: 21619025
Front Endocrinol (Lausanne). 2018 Mar 19;9:111
pubmed: 29615981
Langmuir. 2006 Jun 20;22(13):5760-9
pubmed: 16768506
Drug Discov Today. 2019 Jun;24(6):1258-1267
pubmed: 30953866
Curr Protoc Hum Genet. 2004 Sep;Chapter 9:Unit9.4
pubmed: 18428368
J Mater Chem C Mater. 2019 Jan 7;7(1):170-176
pubmed: 30931127
Genes (Basel). 2019 Jan 09;10(1):
pubmed: 30634483
J Antimicrob Chemother. 2019 Feb 1;74(2):349-356
pubmed: 30476137
Expert Rev Mol Diagn. 2015 Jun;15(6):715-9
pubmed: 25773944
Nano Lett. 2017 Sep 13;17(9):5768-5774
pubmed: 28787169
J Am Chem Soc. 2017 Apr 26;139(16):5870-5876
pubmed: 28409624
Biosens Bioelectron. 2014 Nov 15;61:28-37
pubmed: 24841091
Anal Methods. 2018 Apr 14;10(14):1618-1623
pubmed: 30275912
Analyst. 2018 Feb 26;143(5):1210-1216
pubmed: 29431756
Proc Natl Acad Sci U S A. 2004 Oct 26;101(43):15275-8
pubmed: 15492210
Anal Bioanal Chem. 2016 Jan;408(3):885-93
pubmed: 26603177
Anal Chem. 2006 May 15;78(10):3326-34
pubmed: 16689533
Sensors (Basel). 2016 Feb 24;16(3):285
pubmed: 26927105
Anal Chim Acta. 2017 Nov 15;993:55-62
pubmed: 29078955
Biotechnol Adv. 2014 Mar-Apr;32(2):333-46
pubmed: 24275489
Adv Genet. 2010;70:101-41
pubmed: 20920747
Biosens Bioelectron. 2015 Mar 15;65:198-203
pubmed: 25461158
Chem Rev. 1996 Jun 20;96(4):1533-1554
pubmed: 11848802
Biosens Bioelectron. 2015 May 15;67:443-9
pubmed: 25220802
Clin Chem. 2005 Mar;51(3):661-71
pubmed: 15650028
Anal Bioanal Chem. 2016 Oct;408(26):7255-64
pubmed: 27497966
Analyst. 2012 Oct 21;137(20):4712-9
pubmed: 22950078
Onco Targets Ther. 2015 Jan 16;8:157-68
pubmed: 25653539
Colloids Surf B Biointerfaces. 2005 Feb 25;40(3-4):149-52
pubmed: 15708504
Lab Chip. 2015 Sep 7;15(17):3530-9
pubmed: 26194344
Biointerphases. 2006 Jun;1(2):82-92
pubmed: 20408620
Biopolymers. 2006 Jul;82(4):394-8
pubmed: 16365848
Anal Chem. 2017 Jul 18;89(14):7802-7807
pubmed: 28682593
J Am Chem Soc. 2016 Aug 3;138(30):9397-400
pubmed: 27442229
Biosens Bioelectron. 2017 Jan 15;87:345-351
pubmed: 27587359
Biophys J. 2011 Apr 20;100(8):1996-2005
pubmed: 21504736
Biosens Bioelectron. 2015 Aug 15;70:226-31
pubmed: 25829219
Biosens Bioelectron. 2015 Apr 15;66:481-9
pubmed: 25499661
Biosens Bioelectron. 2017 Jun 15;92:668-678
pubmed: 27836605
Anal Chim Acta. 2017 Feb 15;954:114-120
pubmed: 28081805
Talanta. 2018 Jul 1;184:35-41
pubmed: 29674053
Anal Chim Acta. 2013 May 13;777:1-16
pubmed: 23622959
Cold Spring Harb Perspect Biol. 2017 Jan 3;9(1):
pubmed: 28049645
Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):9-14
pubmed: 17190807
PLoS One. 2016 Jul 14;11(7):e0159094
pubmed: 27416070
Chem Commun (Camb). 2017 Jul 20;53(59):8308-8311
pubmed: 28686257
Adv Colloid Interface Sci. 2011 Feb 17;162(1-2):87-106
pubmed: 21295764
Bioconjug Chem. 2017 Feb 15;28(2):496-506
pubmed: 28042940
ACS Appl Mater Interfaces. 2019 May 29;11(21):18923-18929
pubmed: 31066266
Trends Mol Med. 2016 Jan;22(1):28-37
pubmed: 26700537
Chem Commun (Camb). 2016 Jun 28;52(51):7935-8
pubmed: 27157071
Biosens Bioelectron. 2016 Jun 15;80:98-104
pubmed: 26807523
Chem Soc Rev. 2018 Mar 21;47(6):1996-2019
pubmed: 29446429
Analyst. 2018 Jun 25;143(13):3134-3140
pubmed: 29877531
Eur J Hum Genet. 2018 Jul;26(7):937-945
pubmed: 29681621
Front Chem. 2014 Jul 15;2:48
pubmed: 25077142
Nat Rev Cancer. 2018 Jan;18(1):5-18
pubmed: 29170536
Biomicrofluidics. 2015 Dec 29;9(6):064120
pubmed: 26759637
Adv Exp Med Biol. 2016;924:147-155
pubmed: 27753036
J Biophotonics. 2018 Aug;11(8):e201700363
pubmed: 29570957
Mol Oncol. 2016 Jan;10(1):157-65
pubmed: 26440707
N Biotechnol. 2011 Sep;28(5):458-63
pubmed: 21515428
Methods Mol Biol. 2016;1402:229-241
pubmed: 26721495
Lab Chip. 2017 Aug 8;17(16):2821-2830
pubmed: 28703830
Lab Chip. 2017 Aug 8;17(16):2793-2804
pubmed: 28682395
Lab Chip. 2014 Jan 21;14(2):359-68
pubmed: 24263404
Acta Biomater. 2016 Aug;40:100-118
pubmed: 26921775
Comput Struct Biotechnol J. 2018 Oct 09;16:370-378
pubmed: 30364656
Expert Rev Mol Diagn. 2019 Jan;19(1):71-81
pubmed: 30513011
Clin Chem. 2015 Jan;61(1):297-304
pubmed: 25411185
Gynecol Oncol. 2010 Jul;118(1):81-7
pubmed: 20421130
Talanta. 2017 Nov 1;174:521-526
pubmed: 28738618
Clin Cancer Res. 2018 Apr 1;24(7):1734-1747
pubmed: 29330203
Biochemistry. 2013 Dec 23;52(51):9339-46
pubmed: 24219229
Curr Protoc Mol Biol. 2001 May;Chapter 6:Unit6.4
pubmed: 18265259
Anal Biochem. 2013 Feb 15;433(2):227-34
pubmed: 22750103
Biosens Bioelectron. 2018 Jan 15;99:170-175
pubmed: 28755610
Cold Spring Harb Perspect Med. 2012 Dec 01;2(12):a010272
pubmed: 23209181
Oncogene. 2014 Nov 13;33(46):5311-8
pubmed: 24336324
Oncol Rep. 2018 Mar;39(3):993-1002
pubmed: 29328411
Anal Chem. 2015 Nov 17;87(22):11581-6
pubmed: 26482842
J Phys Chem B. 2010 Jan 21;114(2):775-9
pubmed: 20017525
Mol Cancer. 2018 Jul 31;17(1):109
pubmed: 30064416
Curr Protoc Nucleic Acid Chem. 2019 Jun;77(1):e78
pubmed: 30912630
J Mater Chem B. 2014 Dec 28;2(48):8510-8517
pubmed: 32262210
Sci Rep. 2017 Jan 25;7:41368
pubmed: 28120920
Cancer Discov. 2016 Mar;6(3):286-99
pubmed: 26715644
Angew Chem Int Ed Engl. 2018 Jul 20;57(30):9470-9474
pubmed: 29799663
Cell Rep. 2017 Aug 29;20(9):2215-2226
pubmed: 28854369
Appl Microbiol Biotechnol. 2016 Jul;100(13):5897-906
pubmed: 26969040
Nucleic Acids Res. 2012 Apr;40(8):e56
pubmed: 22241768
Methods Mol Biol. 2017;1571:117-127
pubmed: 28281253
Biosens Bioelectron. 2009 Mar 15;24(7):1924-30
pubmed: 19036575
Nat Rev Clin Oncol. 2018 Jul;15(7):459-466
pubmed: 29666440
Anal Chim Acta. 2014 Dec 10;852:212-7
pubmed: 25441900
Biosens Bioelectron. 2008 Sep 15;24(1):72-7
pubmed: 18440798
Chem Rev. 2009 May;109(5):1948-98
pubmed: 19301873
Opt Express. 2012 Mar 26;20(7):7195-205
pubmed: 22453401
Biosens Bioelectron. 2016 Mar 15;77:435-41
pubmed: 26453904
Biosens Bioelectron. 2016 Jun 15;80:84-90
pubmed: 26807521
Anal Chem. 2017 May 16;89(10):5511-5518
pubmed: 28429595
Genome Res. 2001 Jun;11(6):1095-9
pubmed: 11381035
Anal Bioanal Chem. 2019 Jul;411(19):4425-4444
pubmed: 30710205
Biosens Bioelectron. 2018 Nov 30;120:47-54
pubmed: 30144645
Philos Trans R Soc Lond B Biol Sci. 2018 Jun 5;373(1748):
pubmed: 29685978
Anal Bioanal Chem. 2019 Mar;411(9):1873-1885
pubmed: 30155701
Biosens Bioelectron. 2015 Sep 15;71:365-372
pubmed: 25950930
Cell Res. 2015 Nov;25(11):1250-64
pubmed: 26516143
J Immunol Methods. 1986 May 1;89(1):123-30
pubmed: 2422282
Sensors (Basel). 2014 Jan 29;14(2):2239-58
pubmed: 24481229
Biochim Biophys Acta Gen Subj. 2019 Oct;1863(10):1619-1630
pubmed: 31265898
Crit Rev Biotechnol. 2016;36(3):465-81
pubmed: 25608959
Epigenomics. 2016 Apr;8(4):537-49
pubmed: 27035266
Bioconjug Chem. 2000 Nov-Dec;11(6):749-54
pubmed: 11087321
Biosens Bioelectron. 2018 Oct 15;117:678-689
pubmed: 30007198
Biosens Bioelectron. 2015 Dec 15;74:865-71
pubmed: 26233643
J Colloid Interface Sci. 2017 Feb 1;487:141-148
pubmed: 27764653
Chemistry. 2003 Nov 21;9(22):5686-92
pubmed: 14639652
Cancer Res. 2006 Sep 1;66(17):8462-9468
pubmed: 16951157
Opt Express. 2019 Jul 22;27(15):21532-21545
pubmed: 31510229
Stem Cell Rev Rep. 2018 Jun;14(3):309-322
pubmed: 29541978
Biophys J. 2006 Feb 15;90(4):1175-90
pubmed: 16299077
Biosens Bioelectron. 2011 Aug 15;26(12):4785-90
pubmed: 21719269
Biosens Bioelectron. 2017 Jan 15;87:433-438
pubmed: 27589408
Clin Biochem. 2019 May;67:54-59
pubmed: 30905583
Nat Rev Microbiol. 2013 Aug;11(8):574-85
pubmed: 24020074
Anal Chem. 2007 Aug 15;79(16):6230-5
pubmed: 17625914
Methods Mol Biol. 2018;1708:473-496
pubmed: 29224159
Sensors (Basel). 2018 Oct 18;18(10):
pubmed: 30340405