An open challenge to advance probabilistic forecasting for dengue epidemics.
Peru
Puerto Rico
dengue
epidemic
forecast
Journal
Proceedings of the National Academy of Sciences of the United States of America
ISSN: 1091-6490
Titre abrégé: Proc Natl Acad Sci U S A
Pays: United States
ID NLM: 7505876
Informations de publication
Date de publication:
26 11 2019
26 11 2019
Historique:
pubmed:
13
11
2019
medline:
28
4
2020
entrez:
13
11
2019
Statut:
ppublish
Résumé
A wide range of research has promised new tools for forecasting infectious disease dynamics, but little of that research is currently being applied in practice, because tools do not address key public health needs, do not produce probabilistic forecasts, have not been evaluated on external data, or do not provide sufficient forecast skill to be useful. We developed an open collaborative forecasting challenge to assess probabilistic forecasts for seasonal epidemics of dengue, a major global public health problem. Sixteen teams used a variety of methods and data to generate forecasts for 3 epidemiological targets (peak incidence, the week of the peak, and total incidence) over 8 dengue seasons in Iquitos, Peru and San Juan, Puerto Rico. Forecast skill was highly variable across teams and targets. While numerous forecasts showed high skill for midseason situational awareness, early season skill was low, and skill was generally lowest for high incidence seasons, those for which forecasts would be most valuable. A comparison of modeling approaches revealed that average forecast skill was lower for models including biologically meaningful data and mechanisms and that both multimodel and multiteam ensemble forecasts consistently outperformed individual model forecasts. Leveraging these insights, data, and the forecasting framework will be critical to improve forecast skill and the application of forecasts in real time for epidemic preparedness and response. Moreover, key components of this project-integration with public health needs, a common forecasting framework, shared and standardized data, and open participation-can help advance infectious disease forecasting beyond dengue.
Identifiants
pubmed: 31712420
pii: 1909865116
doi: 10.1073/pnas.1909865116
pmc: PMC6883829
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Research Support, Non-U.S. Gov't
Research Support, U.S. Gov't, Non-P.H.S.
Langues
eng
Sous-ensembles de citation
IM
Pagination
24268-24274Subventions
Organisme : NIBIB NIH HHS
ID : T32 EB009403
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM119582
Pays : United States
Organisme : NIGMS NIH HHS
ID : R01 GM100467
Pays : United States
Organisme : Howard Hughes Medical Institute
Pays : United States
Organisme : NIGMS NIH HHS
ID : U01 GM087728
Pays : United States
Organisme : NIGMS NIH HHS
ID : U01 GM110748
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI102939
Pays : United States
Organisme : NIAID NIH HHS
ID : R21 AI115173
Pays : United States
Organisme : NIGMS NIH HHS
ID : U54 GM088491
Pays : United States
Organisme : NIAID NIH HHS
ID : R01 AI122284
Pays : United States
Organisme : NIGMS NIH HHS
ID : R35 GM133439
Pays : United States
Commentaires et corrections
Type : ErratumIn
Type : ErratumIn
Informations de copyright
Copyright © 2019 the Author(s). Published by PNAS.
Déclaration de conflit d'intérêts
The authors declare no competing interest.
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