Cryo-EM structure of the spinach cytochrome b


Journal

Nature
ISSN: 1476-4687
Titre abrégé: Nature
Pays: England
ID NLM: 0410462

Informations de publication

Date de publication:
11 2019
Historique:
received: 16 05 2019
accepted: 08 10 2019
pubmed: 15 11 2019
medline: 22 4 2020
entrez: 15 11 2019
Statut: ppublish

Résumé

The cytochrome b

Identifiants

pubmed: 31723268
doi: 10.1038/s41586-019-1746-6
pii: 10.1038/s41586-019-1746-6
doi:

Substances chimiques

Lipids 0
Chlorophyll 1406-65-1
Heme 42VZT0U6YR
Cytochrome b6f Complex 9035-40-9
Plastoquinone OAC30J69CN

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

535-539

Subventions

Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/M000265/1
Pays : United Kingdom
Organisme : Wellcome Trust
ID : 108466/Z/15/Z
Pays : United Kingdom

Références

Hill, R. & Bendall, F. Function of the two cytochrome components in chloroplasts: a working hypothesis. Nature 186, 136–137 (1960).
Cramer, W. A., Hasan, S. S. & Yamashita, E. The Q cycle of cytochrome bc complexes: a structure perspective. Biochim. Biophys. Acta 1807, 788–802 (2011).
pubmed: 21352799 pmcid: 3101715
Tikhonov, A. N. The cytochrome b
pubmed: 24485217
Xia, D. et al. Crystal structure of the cytochrome bc
pubmed: 9204897
Esser, L. et al. Inhibitor-complexed structures of the cytochrome bc
pubmed: 18039651
Cape, J. L., Bowman, M. K. & Kramer, D. M. Understanding the cytochrome bc complexes by what they don’t do. The Q-cycle at 30. Trends Plant Sci. 11, 46–55 (2006).
pubmed: 16352458
Stroebel, D., Choquet, Y., Popot, J.-L. & Picot, D. An atypical haem in the cytochrome b
pubmed: 14647374
Kurisu, G., Zhang, H., Smith, J. L. & Cramer, W. A. Structure of the cytochrome b
pubmed: 14526088
Baniulis, D. et al. Structure–function, stability, and chemical modification of the cyanobacterial cytochrome b
pubmed: 19189962 pmcid: 2665108
Bellafiore, S., Barneche, F., Peltier, G. & Rochaix, J. D. State transitions and light adaptation require chloroplast thylakoid protein kinase STN7. Nature 433, 892–895 (2005).
pubmed: 15729347
Yamori, W. & Shikanai, T. Physiological functions of cyclic electron transport around photosystem I in sustaining photosynthesis and plant growth. Annu. Rev. Plant Biol. 67, 81–106 (2016).
pubmed: 26927905
Horton, P. & Black, M. T. Activation of adenosine 5′-triphosphate induced quenching of chlorophyll fluorescence by reduced plastoquinone. The basis of state I–state II transitions in chloroplasts. FEBS Lett. 119, 141–144 (1980).
Vener, A. V., van Kan, P. J. M., Rich, P. R., Ohad, I. & Andersson, B. Plastoquinol at the quinol oxidation site of reduced cytochrome bf mediates signal transduction between light and protein phosphorylation: thylakoid protein kinase deactivation by a single-turnover flash. Proc. Natl Acad. Sci. USA 94, 1585–1590 (1997).
pubmed: 11038603
Gal, A., Hauska, G., Herrmann, R. & Ohad, I. Interaction between light harvesting chlorophyll-a/b protein (LHCII) kinase and cytochrome b
pubmed: 2246258
Allen, J. F., Bennett, J., Steinback, K. E. & Arntzen, C. J. Chloroplast protein phosphorylation couples plastoquinone redox state to distribution of excitation energy between photosystems. Nature 291, 25–29 (1981).
Wood, W. H. J. et al. Dynamic thylakoid stacking regulates the balance between linear and cyclic photosynthetic electron transfer. Nat. Plants 4, 116–127 (2018).
pubmed: 29379151
Zhang, H., Whitelegge, J. P. & Cramer, W. A. Ferredoxin:NADP
pubmed: 11483610
Zhu, X. G., Long, S. P. & Ort, D. R. Improving photosynthetic efficiency for greater yield. Annu. Rev. Plant Biol. 61, 235–261 (2010).
pubmed: 20192734
Simkin, A. J., McAusland, L., Lawson, T. & Raines, C. A. Overexpression of the RieskeFeS protein increases electron transport rates and biomass yield. Plant Physiol. 175, 134–145 (2017).
pubmed: 28754840 pmcid: 5580758
Zhang, Z. et al. Electron transfer by domain movement in cytochrome bc
pubmed: 9565029
Yan, J., Kurisu, G. & Cramer, W. A. Intraprotein transfer of the quinone analogue inhibitor 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone in the cytochrome b
pubmed: 16371475
Yamashita, E., Zhang, H. & Cramer, W. A. Structure of the cytochrome b
pubmed: 17498743 pmcid: 1993820
Hasan, S. S., Yamashita, E., Baniulis, D. & Cramer, W. A. Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b
pubmed: 23440205
Sarewicz, M. et al. Metastable radical state, nonreactive with oxygen, is inherent to catalysis by respiratory and photosynthetic cytochromes bc
pubmed: 28115711
Singh, S. K. et al. Trans-membrane signalling in photosynthetic state transitions: redox- and structure-dependent interaction in vitro between Stt7 kinase and the cytochrome b
pubmed: 27539852 pmcid: 5076842
Zito, F., Vinh, J., Popot, J. L. & Finazzi, G. Chimeric fusions of subunit IV and PetL in the b
pubmed: 11796719
Saif Hasan, S., Yamashita, E. & Cramer, W. A. Transmembrane signaling and assembly of the cytochrome b
pubmed: 23507619 pmcid: 4029431
Nawrocki, W. J. et al. The mechanism of cyclic electron flow. Biochim. Biophys. Acta 1860, 433–438 (2019).
Osyczka, A., Moser, C. C., Daldal, F. & Dutton, P. L. Reversible redox energy coupling in electron transfer chains. Nature 427, 607–612 (2004).
pubmed: 14961113
Świerczek, M. et al. An electronic bus bar lies in the core of cytochrome bc
pubmed: 20651150 pmcid: 4073802
Alric, J., Pierre, Y., Picot, D., Lavergne, J. & Rappaport, F. Spectral and redox characterization of the heme c
pubmed: 16247018
Dietrich, J. & Kühlbrandt, W. Purification and two-dimensional crystallization of highly active cytochrome b
pubmed: 10601646
Porra, R. J., Thompson, W. A. & Kriedemann, P. E. Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim. Biophys. Acta 975, 384–394 (1989).
Cramer, W. A. & Whitmarsh, J. Photosynthetic cytochromes. Annu. Rev. Plant Physiol. 28, 133–172 (1977).
Dawson, R. M. C., Elliot, D. C., Elliot, W. H. & Jones, K. M. Data for Biochemical Research (Clarendon, 1986).
Tan, S. & Ho, K. K. Purification of an acidic plastocyanin from Microcystis aeruginosa. Biochim. Biophys. Acta 973, 111–117 (1989).
pubmed: 2537099
Zhang, K. Gctf: Real-time CTF determination and correction. J. Struct. Biol. 193, 1–12 (2016).
pubmed: 26592709 pmcid: 4711343
Fernandez-Leiro, R. & Scheres, S. H. W. A pipeline approach to single-particle processing in RELION. Acta Crystallogr. D 73, 496–502 (2017).
Zivanov, J. et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3. eLife 7, e42166 (2018).
Hasan, S. S. & Cramer, W. A. Internal lipid architecture of the hetero-oligomeric cytochrome b
pubmed: 24931468 pmcid: 4105968
Pettersen, E. F. et al. UCSF Chimera—a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004).
pubmed: 15264254
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213–221 (2010).
pubmed: 20124702 pmcid: 20124702
Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126–2132 (2004).
pubmed: 15572765 pmcid: 15572765
Proctor, M. S. et al. Plant and algal chlorophyll synthases function in Synechocystis and interact with the YidC/Alb3 membrane insertase. FEBS Lett. 592, 3062–3073 (2018).
pubmed: 30107031 pmcid: 6175206
Rosenthal, P. B. & Henderson, R. Optimal determination of particle orientation, absolute hand and contrast loss in single particle electron cryomicroscopy. J. Mol. Biol. 333, 721–745 (2003).
pubmed: 14568533

Auteurs

Lorna A Malone (LA)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

Pu Qian (P)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

Guy E Mayneord (GE)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

Andrew Hitchcock (A)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

David A Farmer (DA)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

Rebecca F Thompson (RF)

Astbury Centre for Structural Molecular Biology, School of Molecular & Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.

David J K Swainsbury (DJK)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK.

Neil A Ranson (NA)

Astbury Centre for Structural Molecular Biology, School of Molecular & Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK.

C Neil Hunter (CN)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK. c.n.hunter@sheffield.ac.uk.

Matthew P Johnson (MP)

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, UK. matt.johnson@sheffield.ac.uk.

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Classifications MeSH