Towards an integrative understanding of soil biodiversity.

Animals Biodiversity Soil Soil Microbiology
alpha diversity beta diversity biodiversity theory metacommunity theory neutral theory niche theory spatial scale species-energy relationship theory of island biogeography

Journal

Biological reviews of the Cambridge Philosophical Society
ISSN: 1469-185X
Titre abrégé: Biol Rev Camb Philos Soc
Pays: England
ID NLM: 0414576

Informations de publication

Date de publication:
04 2020
Historique:
received: 08 01 2019
revised: 07 10 2019
accepted: 11 10 2019
pubmed: 16 11 2019
medline: 9 1 2021
entrez: 16 11 2019
Statut: ppublish

Résumé

Soil is one of the most biodiverse terrestrial habitats. Yet, we lack an integrative conceptual framework for understanding the patterns and mechanisms driving soil biodiversity. One of the underlying reasons for our poor understanding of soil biodiversity patterns relates to whether key biodiversity theories (historically developed for aboveground and aquatic organisms) are applicable to patterns of soil biodiversity. Here, we present a systematic literature review to investigate whether and how key biodiversity theories (species-energy relationship, theory of island biogeography, metacommunity theory, niche theory and neutral theory) can explain observed patterns of soil biodiversity. We then discuss two spatial compartments nested within soil at which biodiversity theories can be applied to acknowledge the scale-dependent nature of soil biodiversity.

Identifiants

DOI: 10.1111/brv.12567 PMID: 31729831 PMC: PMC7078968
pubmed: 31729831
doi: 10.1111/brv.12567
pmc: PMC7078968
doi:

Substances chimiques

Soil 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't Systematic Review

Langues

eng

Sous-ensembles de citation

IM

Pagination

350-364

Subventions

Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/L02456X/1
Pays : United Kingdom

Informations de copyright

© 2019 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.

Références

PLoS One. 2013 May 22;8(5):e63375
pubmed: 23717418
Mycorrhiza. 2013 Jan;23(1):11-9
pubmed: 22592855
Ecol Evol. 2016 Sep 21;6(20):7253-7262
pubmed: 28725395
Microb Ecol. 2016 Jul;72(1):221-230
pubmed: 27072664
Trends Ecol Evol. 2011 Jul;26(7):340-8
pubmed: 21561679
ISME J. 2014 Aug;8(8):1577-87
pubmed: 24553468
Trends Ecol Evol. 2012 Apr;27(4):198-202
pubmed: 22401902
J Theor Biol. 2011 Jan 21;269(1):150-65
pubmed: 20946903
Nat Rev Microbiol. 2019 Oct;17(10):621-631
pubmed: 31350537
Oecologia. 2011 Nov;167(3):747-57
pubmed: 21625982
Oecologia. 2013 Jun;172(2):495-503
pubmed: 23086506
Nature. 2015 Dec 3;528(7580):69-76
pubmed: 26595276
Biol Rev Camb Philos Soc. 2005 Feb;80(1):1-25
pubmed: 15727036
Trends Ecol Evol. 2012 Apr;27(4):203-8
pubmed: 22341498
Annu Rev Phytopathol. 2015;53:403-24
pubmed: 26243728
New Phytol. 2017 Jul;215(2):756-765
pubmed: 28542845
New Phytol. 2018 Apr;218(2):542-553
pubmed: 29468690
FEMS Microbiol Rev. 2013 Nov;37(6):936-54
pubmed: 23550883
Mycologia. 2012 Mar-Apr;104(2):345-52
pubmed: 22075782
Oecologia. 2012 Nov;170(3):745-54
pubmed: 22534694
Mol Ecol. 2019 Feb;28(3):528-543
pubmed: 30375061
Ecol Lett. 2015 Jan;18(1):85-95
pubmed: 25430889
Nat Ecol Evol. 2017 Dec;1(12):1828-1835
pubmed: 29038473
Plant Cell Environ. 2009 Jun;32(6):666-81
pubmed: 19143988
Oecologia. 2018 Mar;186(3):655-664
pubmed: 29350285
Mycorrhiza. 2009 Feb;19(2):99-111
pubmed: 18941804
Ecology. 2006 Jun;87(6):1411-23
pubmed: 16869415
Trends Ecol Evol. 2018 Sep;33(9):701-712
pubmed: 30072217
Nat Ecol Evol. 2019 Jun;3(6):919-927
pubmed: 31110252
PLoS One. 2015 May 11;10(5):e0126962
pubmed: 25961300
ISME J. 2017 Sep;11(9):1943-1948
pubmed: 28409772
Annu Rev Entomol. 2018 Jan 7;63:433-452
pubmed: 29324043
Biol Rev Camb Philos Soc. 2018 Jun 19;:
pubmed: 29920907
Mol Ecol. 2013 Feb;22(4):1171-84
pubmed: 23293849
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):639-641
pubmed: 29326234
Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10854-61
pubmed: 15243158
Nat Commun. 2015 Nov 23;6:8862
pubmed: 26593272
Ecol Evol. 2014 Dec;4(24):4766-74
pubmed: 25558367
Biol Lett. 2012 Dec 23;8(6):956-9
pubmed: 22832130
ISME J. 2010 Mar;4(3):337-45
pubmed: 19924158
Ecol Lett. 2018 Nov;21(11):1737-1751
pubmed: 30182500
Oecologia. 2000 Nov;125(3):420-427
pubmed: 28547337
Ecology. 2011 Jun;92(6):1292-302
pubmed: 21797157
Science. 1995 Sep 1;269(5228):1257-60
pubmed: 17732112
Science. 2001 Sep 28;293(5539):2413-8
pubmed: 11577228
Microbiome. 2018 Feb 5;6(1):27
pubmed: 29402331
Nature. 2007 Oct 4;449(7162):599-602
pubmed: 17914396
Nat Commun. 2017 Feb 08;8:14349
pubmed: 28176768
Nature. 2002 Mar 28;416(6879):427-30
pubmed: 11919631
Nature. 2000 May 11;405(6783):228-33
pubmed: 10821283
Ecology. 2011 Jan;92(1):57-65
pubmed: 21560676
New Phytol. 2015 Mar;205(4):1437-42
pubmed: 25421912
Ecol Lett. 2006 Jul;9(7):870-86
pubmed: 16796577
Microbiol Mol Biol Rev. 2013 Sep;77(3):342-56
pubmed: 24006468
Nat Ecol Evol. 2018 May;2(5):782-790
pubmed: 29662224
Ecol Lett. 2007 Feb;10(2):95-104
pubmed: 17257097
Ecol Evol. 2014 Jun;4(11):2263-77
pubmed: 25360266
Nat Microbiol. 2018 Feb;3(2):189-196
pubmed: 29158606
J Anim Ecol. 2010 Nov;79(6):1215-25
pubmed: 20726922
J Anim Ecol. 2015 May;84(3):680-691
pubmed: 25420573
FEMS Microbiol Ecol. 2017 Oct 1;93(10):
pubmed: 28961809
PLoS One. 2010 Jul 13;5(7):e11567
pubmed: 20644639
PLoS One. 2017 May 8;12(5):e0176828
pubmed: 28481906
Nature. 2014 Nov 27;515(7528):505-11
pubmed: 25428498
Nature. 2018 Aug;560(7717):233-237
pubmed: 30069051
Ecology. 2010 Dec;91(12):3631-40
pubmed: 21302834
Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):797-802
pubmed: 25561561
J Exp Bot. 2016 Jun;67(12):3629-43
pubmed: 26980751
Ecology. 2016 Sep;97(9):2374-2383
pubmed: 27859069
Trends Microbiol. 2019 Sep;27(9):771-780
pubmed: 31138481
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1326-32
pubmed: 25733885
J Anim Ecol. 2012 Jan;81(1):214-21
pubmed: 21722106
FEMS Microbiol Ecol. 2003 May 1;44(2):203-15
pubmed: 19719637
Am Nat. 2002 Apr;159(4):420-6
pubmed: 18707425
Eur J Protistol. 2015 Feb;51(1):42-54
pubmed: 25553551
Nat Ecol Evol. 2018 May;2(5):819-826
pubmed: 29610472
Trends Ecol Evol. 2012 Jan;27(1):40-6
pubmed: 21944861
FEMS Microbiol Rev. 2017 Sep 1;41(5):599-623
pubmed: 28961933
Ecology. 2012 May;93(5):1115-24
pubmed: 22764497
Annu Rev Plant Biol. 2006;57:233-66
pubmed: 16669762
ISME J. 2018 Feb;12(2):312-319
pubmed: 29135971
ISME J. 2017 Mar;11(3):817-820
pubmed: 27911440
Science. 2003 Sep 19;301(5640):1717-20
pubmed: 14500981
Trends Ecol Evol. 2006 Aug;21(8):451-7
pubmed: 16766082
Science. 2004 Jun 11;304(5677):1634-7
pubmed: 15192219
PLoS One. 2007 Nov 28;2(11):e1248
pubmed: 18043755
Trends Ecol Evol. 2015 Feb;30(2):104-13
pubmed: 25542312
Philos Trans R Soc Lond B Biol Sci. 2016 Apr 5;371(1691):20150226
pubmed: 26977066
Q Rev Biol. 2010 Jun;85(2):183-206
pubmed: 20565040
ISME J. 2013 Jul;7(7):1310-21
pubmed: 23446837
Ecol Lett. 2014 Nov;17(11):1365-79
pubmed: 25199649
Mov Ecol. 2019 Jul 2;7:20
pubmed: 31308949
Mol Ecol. 2012 Aug;21(16):4122-36
pubmed: 22703050
ISME J. 2016 Apr;10(4):885-96
pubmed: 26394006
Mol Ecol Resour. 2017 Nov;17(6):1257-1270
pubmed: 28323394
Trends Ecol Evol. 2014 Dec;29(12):692-9
pubmed: 25459399
Zoology (Jena). 2002;105(4):367-74
pubmed: 16351885

Auteurs

Madhav P Thakur (MP)

Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Gelderland, The Netherlands.
German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biology, Leipzig University, Leipzig, Saxony, Germany.
ORCID: 0000-0001-9426-1313

Helen R P Phillips (HRP)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.

Ulrich Brose (U)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Thuringia, Germany.

Franciska T De Vries (FT)

School of Earth and Environmental Sciences, The University of Manchester, Manchester, North West England, UK.

Patrick Lavelle (P)

Sorbonne Université, CNRS, UPEC, Paris, Île-de-France, France.

Michel Loreau (M)

Centre for Biodiversity Theory and Modelling, Theoretical and Experimental Ecology Station, CNRS and Paul Sabatier University, Moulis, Occitanie, France.

Jerome Mathieu (J)

Sorbonne Université, CNRS, UPEC, Paris, Île-de-France, France.

Christian Mulder (C)

Department Biological, Geological and Environmental Sciences, University of Catania, Catania, Sicily, Italy.

Wim H Van der Putten (WH)

Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Gelderland, The Netherlands.
Laboratory of Nematology, Wageningen University, Wageningen, Gelderland, The Netherlands.

Matthias C Rillig (MC)

Freie Universität Berlin, Institute of Biology, Berlin, Germany.
Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany.

David A Wardle (DA)

Asian School for the Environment, Nanyang Technological University, Singapore, Singapore.

Elizabeth M Bach (EM)

Department of Biology and School of Global Environmental Sustainability, Colorado State University, Fort Collins, CO, USA.

Marie L C Bartz (MLC)

Center of Functional Ecology, Department of Life Sciences, University of Coimbra, Coimbra, Centro, Portugal.
Universidade Positivo, Rua Professor Pedro Viriato Parigot de Souza, Curitiba, Paraná, Brazil.

Joanne M Bennett (JM)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biology, Martin Luther University Halle-Wittenberg, Halle (Saale), Saxony-Anhalt, Germany.

Maria J I Briones (MJI)

Departamento de Ecología y Biología Animal, Universidad de Vigo, Vigo, Galicien, Spain.

George Brown (G)

Embrapa Forestry, CEP 83411-000, Colombo, PR, Brazil.

Thibaud Decaëns (T)

Centre d'Ecologie Fonctionnelle et Evolutive (CEFE UMR 5175, CNRS-Université de Montpellier-Université Paul-Valéry Montpellier-EPHE), Montpellier, Occitanie, France.

Nico Eisenhauer (N)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biology, Leipzig University, Leipzig, Saxony, Germany.

Olga Ferlian (O)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biology, Leipzig University, Leipzig, Saxony, Germany.

Carlos António Guerra (CA)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Biology, Martin Luther University Halle-Wittenberg, Halle (Saale), Saxony-Anhalt, Germany.

Birgitta König-Ries (B)

German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Saxony, Germany.
Institute of Computer Science, Friedrich Schiller University Jena, Jena, Thuringia, Germany.

Alberto Orgiazzi (A)

European Commission, Joint Research Centre (JRC), Sustainable Resources Directorate, Ispra, Varese, Italy.

Kelly S Ramirez (KS)

Department of Terrestrial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Gelderland, The Netherlands.

David J Russell (DJ)

Senckenberg Museum of Natural History Görlitz, Goerlitz, Saxony, Germany.

Michiel Rutgers (M)

National Institute for Public Health and the Environment, Bilthoven, Utrecht, The Netherlands.

Diana H Wall (DH)

Department of Biology and School of Global Environmental Sustainability, Colorado State University, Fort Collins, CO, USA.

Erin K Cameron (EK)

Faculty of Biological and Environmental Sciences, University of Helsinki, Helsinki, Uusimaa, Finland.
Department of Environmental Science, Saint Mary's University, Halifax, Nova Scotia, Canada.

Articles similaires

Evaluating the efficacy of telesurgery with dual console SSI Mantra Surgical Robotic System: experiment on animal model and clinical trials.

Sudhir Prem Srivastava, Vishwajyoti Pascual Srivastava, Avinesh Singh et al.
1.00
Robotic Surgical Procedures Animals Humans Telemedicine Models, Animal

Odour generalisation and detection dog training.

Lyn Caldicott, Thomas W Pike, Helen E Zulch et al.
1.00
Animals Odorants Dogs Generalization, Psychological Smell

FBXO22 inhibits colitis and colorectal carcinogenesis by regulating the degradation of the S2448-phosphorylated form of mTOR.

Minle Li, Xuan Chen, Pengfei Qu et al.
1.00
Animals TOR Serine-Threonine Kinases Colorectal Neoplasms Colitis Mice

Use of organic material provided by an automatic enrichment device by weaner pigs and its influence on tail lesions.

Philipp Heseker, Jeanette Probst, Stefanie Ammer et al.
1.00
Animals Tail Swine Behavior, Animal Animal Husbandry

Classifications MeSH

questionsmedicales.fr › Eucaryotes › Animaux › Towards an integrative understanding of soil...
questionsmedicales.fr › Environnement et santé publique › Environnement › Écosystème › Biodiversité › Towards an integrative understanding of soil...
questionsmedicales.fr › Environnement et santé publique › Environnement › Sol › Towards an integrative understanding of soil...
questionsmedicales.fr › Environnement et santé publique › Santé publique › Microbiologie de l'environnement › Microbiologie du sol › Towards an integrative understanding of soil...