Successful sample preparation for serial crystallography experiments.

XFELs batch crystallization micro-crystallization serial macromolecular crystallography vapour diffusion

Journal

Journal of applied crystallography
ISSN: 0021-8898
Titre abrégé: J Appl Crystallogr
Pays: United States
ID NLM: 9876190

Informations de publication

Date de publication:
01 Dec 2019
Historique:
received: 14 06 2019
accepted: 02 10 2019
entrez: 5 12 2019
pubmed: 5 12 2019
medline: 5 12 2019
Statut: epublish

Résumé

Serial crystallography, at both synchrotron and X-ray free-electron laser light sources, is becoming increasingly popular. However, the tools in the majority of crystallization laboratories are focused on producing large single crystals by vapour diffusion that fit the cryo-cooled paradigm of modern synchrotron crystallography. This paper presents several case studies and some ideas and strategies on how to perform the conversion from a single crystal grown by vapour diffusion to the many thousands of micro-crystals required for modern serial crystallography grown by batch crystallization. These case studies aim to show (i) how vapour diffusion conditions can be converted into batch by optimizing the length of time crystals take to appear; (ii) how an understanding of the crystallization phase diagram can act as a guide when designing batch crystallization protocols; and (iii) an accessible methodology when attempting to scale batch conditions to larger volumes. These methods are needed to minimize the sample preparation gap between standard rotation crystallography and dedicated serial laboratories, ultimately making serial crystallography more accessible to all crystallographers.

Identifiants

pubmed: 31798361
doi: 10.1107/S1600576719013517
pii: jo5052
pmc: PMC6878878
doi:

Types de publication

Journal Article

Langues

eng

Pagination

1385-1396

Subventions

Organisme : Biotechnology and Biological Sciences Research Council
ID : BB/P000622/1
Pays : United Kingdom

Informations de copyright

© John H. Beale et al. 2019.

Références

Acta Crystallogr D Biol Crystallogr. 2003 Feb;59(Pt 2):396-9
pubmed: 12554964
Nat Commun. 2014;5:3309
pubmed: 24525480
Sci Rep. 2017 Mar 16;7:44628
pubmed: 28300169
IUCrJ. 2017 May 24;4(Pt 4):439-454
pubmed: 28875031
J Biol Chem. 2018 Nov 23;293(47):18099-18109
pubmed: 30217820
Struct Dyn. 2015;2(4):
pubmed: 26726311
Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 1):1601-5
pubmed: 12351870
Acta Crystallogr D Biol Crystallogr. 2007 Apr;63(Pt 4):550-4
pubmed: 17372361
Nat Methods. 2017 Apr;14(4):443-449
pubmed: 28250468
Biochem Biophys Res Commun. 1996 Oct 23;227(3):707-11
pubmed: 8885998
Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):178-191
pubmed: 30821706
Acta Crystallogr D Struct Biol. 2018 Sep 1;74(Pt 9):877-894
pubmed: 30198898
Sci Rep. 2018 Feb 7;8(1):2541
pubmed: 29416086
Nat Methods. 2017 Feb 13;14(4):399-402
pubmed: 28192420
Rev Sci Instrum. 2012 Mar;83(3):035108
pubmed: 22462961
J Appl Crystallogr. 2016 Mar 29;49(Pt 2):680-689
pubmed: 27047311
J Synchrotron Radiat. 2013 Sep;20(Pt 5):805-8
pubmed: 23955046
Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):597-601
pubmed: 16407115
Acta Crystallogr D Biol Crystallogr. 1998 Jan 1;54(Pt 1):8-15
pubmed: 9761813
Nature. 2016 Nov 3;539(7627):43-47
pubmed: 27680699
Struct Dyn. 2015 Aug 19;2(4):041719
pubmed: 26798818
Nat Methods. 2017 Aug;14(8):805-810
pubmed: 28628129
Acta Crystallogr D Biol Crystallogr. 2015 Oct;71(Pt 10):1987-97
pubmed: 26457423
Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130316
pubmed: 24914149
Acta Crystallogr F Struct Biol Commun. 2015 Mar;71(Pt 3):247-60
pubmed: 25760697
Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12769-74
pubmed: 25136092
Nature. 2015 Jun 25;522(7557):502-6
pubmed: 26083743
Sci Rep. 2014 Aug 12;4:6026
pubmed: 25113598
Structure. 2016 Apr 5;24(4):631-640
pubmed: 26996959
Sci Rep. 2016 May 03;6:25345
pubmed: 27139248
Sci Rep. 2017 Jan 16;7:35821
pubmed: 28091515
Acta Crystallogr D Biol Crystallogr. 1996 Nov 1;52(Pt 6):1098-106
pubmed: 15299569
Nucleic Acids Res. 2007;35(6):e45
pubmed: 17317681
J Synchrotron Radiat. 2015 Nov;22(6):1372-8
pubmed: 26524301
Mol Biotechnol. 1999 Aug;12(1):13-23
pubmed: 10554770
Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):780-5
pubmed: 15299809
Nat Commun. 2017 Sep 14;8(1):542
pubmed: 28912485
Structure. 2017 Sep 5;25(9):1461-1468.e2
pubmed: 28781082
J Struct Biol. 2003 Apr;142(1):66-76
pubmed: 12718920
Nature. 2000 Aug 17;406(6797):752-7
pubmed: 10963603
J Synchrotron Radiat. 2019 Sep 1;26(Pt 5):1820-1825
pubmed: 31490175
Nat Methods. 2016 Jan;13(1):59-62
pubmed: 26619013
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1259-62
pubmed: 23027762
Acta Crystallogr D Biol Crystallogr. 1999 May;55(Pt 5):988-93
pubmed: 10216295
PLoS One. 2008 Apr 23;3(4):e1998
pubmed: 18431483
PLoS One. 2011;6(7):e22582
pubmed: 21818343
Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):601-5
pubmed: 14993707
IUCrJ. 2014 Feb 28;1(Pt 2):95-100
pubmed: 25075325
Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):387-97
pubmed: 25664750

Auteurs

John H Beale (JH)

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.

Rachel Bolton (R)

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.
Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, UK.

Stephen A Marshall (SA)

Manchester Institute of Biotechnology, The University of Manchester, Princess Street, Manchester M1 7DN, UK.

Emma V Beale (EV)

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.

Stephen B Carr (SB)

Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0FA, UK.

Ali Ebrahim (A)

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.
School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.

Tadeo Moreno-Chicano (T)

Institute de Biologie Structurale, 71 Avenue des Martyrs, 38000 Grenoble, France.

Michael A Hough (MA)

School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.

Jonathan A R Worrall (JAR)

School of Life Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK.

Ivo Tews (I)

Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, UK.

Robin L Owen (RL)

Diamond Light Source Ltd, Harwell Science and Innovation Campus, Fermi Avenue, Didcot OX11 0DE, UK.

Classifications MeSH