Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS).


Journal

BMC bioinformatics
ISSN: 1471-2105
Titre abrégé: BMC Bioinformatics
Pays: England
ID NLM: 100965194

Informations de publication

Date de publication:
10 Dec 2019
Historique:
received: 12 08 2019
accepted: 21 08 2019
entrez: 12 12 2019
pubmed: 12 12 2019
medline: 11 2 2020
Statut: epublish

Résumé

Tuberculosis (TB) represents a worldwide cause of mortality (it infects one third of the world's population) affecting mostly developing countries, including India, and recently also developed ones due to the increased mobility of the world population and the evolution of different new bacterial strains capable to provoke multi-drug resistance phenomena. Currently, antitubercular drugs are unable to eradicate subpopulations of Mycobacterium tuberculosis (MTB) bacilli and therapeutic vaccinations have been postulated to overcome some of the critical issues related to the increase of drug-resistant forms and the difficult clinical and public health management of tuberculosis patients. The Horizon 2020 EC funded project "In Silico Trial for Tuberculosis Vaccine Development" (STriTuVaD) to support the identification of new therapeutic interventions against tuberculosis through novel in silico modelling of human immune responses to disease and vaccines, thereby drastically reduce the cost of clinical trials in this critical sector of public healthcare. We present the application of the Universal Immune System Simulator (UISS) computational modeling infrastructure as a disease model for TB. The model is capable to simulate the main features and dynamics of the immune system activities i.e., the artificial immunity induced by RUTI® vaccine, a polyantigenic liposomal therapeutic vaccine made of fragments of Mycobacterium tuberculosis cells (FCMtb). Based on the available data coming from phase II Clinical Trial in subjects with latent tuberculosis infection treated with RUTI® and isoniazid, we generated simulation scenarios through validated data in order to tune UISS accordingly to STriTuVaD objectives. The first case simulates the establishment of MTB latent chronic infection with some typical granuloma formation; the second scenario deals with a reactivation phase during latent chronic infection; the third represents the latent chronic disease infection scenario during RUTI® vaccine administration. The application of this computational modeling strategy helpfully contributes to simulate those mechanisms involved in the early stages and in the progression of tuberculosis infection and to predict how specific therapeutical strategies will act in this scenario. In view of these results, UISS owns the capacity to open the door for a prompt integration of in silico methods within the pipeline of clinical trials, supporting and guiding the testing of treatments in patients affected by tuberculosis.

Sections du résumé

BACKGROUND BACKGROUND
Tuberculosis (TB) represents a worldwide cause of mortality (it infects one third of the world's population) affecting mostly developing countries, including India, and recently also developed ones due to the increased mobility of the world population and the evolution of different new bacterial strains capable to provoke multi-drug resistance phenomena. Currently, antitubercular drugs are unable to eradicate subpopulations of Mycobacterium tuberculosis (MTB) bacilli and therapeutic vaccinations have been postulated to overcome some of the critical issues related to the increase of drug-resistant forms and the difficult clinical and public health management of tuberculosis patients. The Horizon 2020 EC funded project "In Silico Trial for Tuberculosis Vaccine Development" (STriTuVaD) to support the identification of new therapeutic interventions against tuberculosis through novel in silico modelling of human immune responses to disease and vaccines, thereby drastically reduce the cost of clinical trials in this critical sector of public healthcare.
RESULTS RESULTS
We present the application of the Universal Immune System Simulator (UISS) computational modeling infrastructure as a disease model for TB. The model is capable to simulate the main features and dynamics of the immune system activities i.e., the artificial immunity induced by RUTI® vaccine, a polyantigenic liposomal therapeutic vaccine made of fragments of Mycobacterium tuberculosis cells (FCMtb). Based on the available data coming from phase II Clinical Trial in subjects with latent tuberculosis infection treated with RUTI® and isoniazid, we generated simulation scenarios through validated data in order to tune UISS accordingly to STriTuVaD objectives. The first case simulates the establishment of MTB latent chronic infection with some typical granuloma formation; the second scenario deals with a reactivation phase during latent chronic infection; the third represents the latent chronic disease infection scenario during RUTI® vaccine administration.
CONCLUSIONS CONCLUSIONS
The application of this computational modeling strategy helpfully contributes to simulate those mechanisms involved in the early stages and in the progression of tuberculosis infection and to predict how specific therapeutical strategies will act in this scenario. In view of these results, UISS owns the capacity to open the door for a prompt integration of in silico methods within the pipeline of clinical trials, supporting and guiding the testing of treatments in patients affected by tuberculosis.

Identifiants

pubmed: 31822272
doi: 10.1186/s12859-019-3045-5
pii: 10.1186/s12859-019-3045-5
pmc: PMC6904993
doi:

Substances chimiques

Tuberculosis Vaccines 0

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

504

Subventions

Organisme : H2020 Societal Challenges
ID : 777123

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Auteurs

Marzio Pennisi (M)

Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.

Giulia Russo (G)

Department of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy.

Giuseppe Sgroi (G)

Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.

Angela Bonaccorso (A)

Department of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy.

Giuseppe Alessandro Parasiliti Palumbo (GA)

Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy.

Epifanio Fichera (E)

Etna Biotech S.r.l., 95121, Catania, Italy.

Dipendra Kumar Mitra (DK)

Department of Transplant Immunology and Immunogenetics, All India Institute of Medical Sciences, New Delhi, 110029, India.

Kenneth B Walker (KB)

TuBerculosis Vaccine Initiative (TBVI), Lelystad, 8219, The Netherlands.

Pere-Joan Cardona (PJ)

Archivel Farma, S.L, 08916, Badalona, Spain.
Experimental Tuberculosis Unit (UTE), Fundació Institut Germans Trias i Pujol (IGTP), Universitat Autònoma de Barcelona (UAB), Badalona, Spain.
Centro de Investigación Biomédica en Red (CIBER) de Enfermedades Respiratorias, Madrid, Spain.

Merce Amat (M)

Archivel Farma, S.L, 08916, Badalona, Spain.

Marco Viceconti (M)

Department of Industrial Engineering, Alma Mater Studiorum, University of Bologna, 40136, Bologna, Italy.

Francesco Pappalardo (F)

Department of Drug Sciences, University of Catania, Italy, 95125, Catania, Italy. francesco.pappalardo@unict.it.

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