A database of geopositioned Middle East Respiratory Syndrome Coronavirus occurrences.


Journal

Scientific data
ISSN: 2052-4463
Titre abrégé: Sci Data
Pays: England
ID NLM: 101640192

Informations de publication

Date de publication:
13 12 2019
Historique:
received: 16 07 2019
accepted: 15 11 2019
entrez: 15 12 2019
pubmed: 15 12 2019
medline: 12 9 2020
Statut: epublish

Résumé

As a World Health Organization Research and Development Blueprint priority pathogen, there is a need to better understand the geographic distribution of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) and its potential to infect mammals and humans. This database documents cases of MERS-CoV globally, with specific attention paid to zoonotic transmission. An initial literature search was conducted in PubMed, Web of Science, and Scopus; after screening articles according to the inclusion/exclusion criteria, a total of 208 sources were selected for extraction and geo-positioning. Each MERS-CoV occurrence was assigned one of the following classifications based upon published contextual information: index, unspecified, secondary, mammal, environmental, or imported. In total, this database is comprised of 861 unique geo-positioned MERS-CoV occurrences. The purpose of this article is to share a collated MERS-CoV database and extraction protocol that can be utilized in future mapping efforts for both MERS-CoV and other infectious diseases. More broadly, it may also provide useful data for the development of targeted MERS-CoV surveillance, which would prove invaluable in preventing future zoonotic spillover.

Identifiants

pubmed: 31836720
doi: 10.1038/s41597-019-0330-0
pii: 10.1038/s41597-019-0330-0
pmc: PMC6911100
doi:

Types de publication

Dataset Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

318

Subventions

Organisme : World Health Organization
ID : 001
Pays : International
Organisme : Bill and Melinda Gates Foundation (Bill & Melinda Gates Foundation)
ID : OPP1132415
Pays : International
Organisme : Bill and Melinda Gates Foundation (Bill & Melinda Gates Foundation)
ID : OPP1181128
Pays : International

Références

Emerg Infect Dis. 2017 Mar;23(3):550-551
pubmed: 28221127
Infect Ecol Epidemiol. 2015 Jul 15;5:28305
pubmed: 26183160
Am J Infect Control. 2018 Apr;46(4):436-440
pubmed: 29153641
PLoS Pathog. 2014 Dec 04;10(12):e1004457
pubmed: 25474536
Jpn J Infect Dis. 2016 Sep 21;69(5):361-6
pubmed: 26743151
Emerg Infect Dis. 2015 Dec;21(12):2278-80
pubmed: 26583433
Lancet Infect Dis. 2013 Sep;13(9):745-51
pubmed: 23782859
Lancet Infect Dis. 2013 Oct;13(10):859-66
pubmed: 23933067
Virus Genes. 2016 Dec;52(6):848-854
pubmed: 27357298
Genome Announc. 2015 Aug 13;3(4):
pubmed: 26272560
Emerg Infect Dis. 2014 Aug;20(8):1339-42
pubmed: 25075761
Emerg Infect Dis. 2016 Apr;22(4):647-56
pubmed: 26981708
Emerg Infect Dis. 2014 Jul;20(7):1231-4
pubmed: 24964193
Lancet. 2013 Dec 14;382(9909):1993-2002
pubmed: 24055451
Euro Surveill. 2014 Jun 12;19(23):
pubmed: 24957745
Western Pac Surveill Response J. 2015 Jun 27;6(3):3-7
pubmed: 26668760
mBio. 2014 Feb 18;5(1):
pubmed: 24549846
Emerg Infect Dis. 2014 Aug;20(8):1319-22
pubmed: 25075637
PLoS One. 2017 Oct 13;12(10):e0183850
pubmed: 29028812
PLoS One. 2016 Nov 3;11(11):e0165978
pubmed: 27812197
Indoor Air. 2018 Jan;28(1):51-63
pubmed: 28960494
J Epidemiol Glob Health. 2017 Mar;7(1):29-36
pubmed: 27302882
PLoS One. 2015 Oct 16;10(10):e0140125
pubmed: 26473733
Emerg Infect Dis. 2016 Jan;22(1):32-40
pubmed: 26692003
Ann Thorac Med. 2016 Apr-Jun;11(2):128-31
pubmed: 27168861
Travel Med Infect Dis. 2018 Jan - Feb;21:51-55
pubmed: 29031546
Epidemiol Health. 2015 Sep 17;37:e2015041
pubmed: 26725225
Korean J Radiol. 2016 Jan-Feb;17(1):166-70
pubmed: 26798230
East Mediterr Health J. 2016 Oct 02;22(7):468-475
pubmed: 27714741
Emerg Infect Dis. 2014 Jun;20(6):1049-53
pubmed: 24856660
Emerg Infect Dis. 2015 Jul;21(7):1153-8
pubmed: 26079346
Euro Surveill. 2014 May 29;19(21):
pubmed: 24906375
Clin Infect Dis. 2017 May 15;64(10):1457-1458
pubmed: 28444154
Lancet Infect Dis. 2014 Feb;14(2):140-5
pubmed: 24355866
Emerg Infect Dis. 2014 Sep;20(9):1562-4
pubmed: 25148267
Emerg Infect Dis. 2016 Jun;22(6):
pubmed: 27192543
Western Pac Surveill Response J. 2015 Mar 26;6(1):62-5
pubmed: 25960925
Euro Surveill. 2014 Jun 12;19(23):
pubmed: 24957744
PLoS One. 2018 Jan 16;13(1):e0189914
pubmed: 29337997
Epidemiol Health. 2015 Aug 15;37:e2015036
pubmed: 26493651
Ann Thorac Surg. 2017 Aug;104(2):e127-e129
pubmed: 28734432
Infect Control Hosp Epidemiol. 2016 Oct;37(10):1147-55
pubmed: 27426423
Respir Care. 2016 Mar;61(3):340-8
pubmed: 26701365
Emerg Infect Dis. 2016 Jun;22(6):1129-31
pubmed: 27070501
Sci Data. 2015 Apr 14;2:150016
pubmed: 25977820
Emerg Infect Dis. 2014 Apr;20(4):552-9
pubmed: 24655412
N Engl J Med. 2013 Jun 27;368(26):2487-94
pubmed: 23718156
Ann Intern Med. 2016 Jul 19;165(2):87-93
pubmed: 27272273
Elife. 2014 Jun 27;3:
pubmed: 24972829
AJR Am J Roentgenol. 2015 Sep;205(3):W267-74
pubmed: 26102309
Crit Care. 2016 May 07;20(1):123
pubmed: 27153800
Ann Saudi Med. 2015 May-Jun;35(3):203-9
pubmed: 26409794
Lancet Infect Dis. 2015 May;15(5):559-64
pubmed: 25863564
Zoonoses Public Health. 2019 Feb;66(1):35-46
pubmed: 30421581
Arch Virol. 2017 Aug;162(8):2445-2449
pubmed: 28421366
Ann Intensive Care. 2016 Dec;6(1):101
pubmed: 27778310
Emerg Infect Dis. 2016 Jul;22(7):1162-8
pubmed: 27314227
Sci Immunol. 2017 Aug 4;2(14):
pubmed: 28778905
N Engl J Med. 2012 Nov 8;367(19):1814-20
pubmed: 23075143
Tanaffos. 2015;14(4):262-7
pubmed: 27114729
Zoonoses Public Health. 2018 May;65(3):322-333
pubmed: 29239118
Saudi Med J. 2015 Apr;36(4):484-6
pubmed: 25828287
One Health. 2017 Mar 10;3:41-43
pubmed: 28616502
Epidemiol Health. 2015 Jul 21;37:e2015033
pubmed: 26212508
Emerg Themes Epidemiol. 2014 Oct 17;11:16
pubmed: 25328533
BMC Infect Dis. 2017 Jan 5;17(1):23
pubmed: 28056850
Nature. 2013 Apr 25;496(7446):504-7
pubmed: 23563266
Clin Infect Dis. 2017 Aug 15;65(4):675-679
pubmed: 28575307
Am J Pathol. 2016 Mar;186(3):652-8
pubmed: 26857507
Viral Immunol. 2017 Nov;30(9):649-653
pubmed: 28873020
Lancet. 2013 Jun 29;381(9885):2265-72
pubmed: 23727167
Emerg Microbes Infect. 2017 Jun 21;6(6):e56
pubmed: 28634355
Transbound Emerg Dis. 2016 Aug;63(4):365-72
pubmed: 27213718
Euro Surveill. 2013 Aug 22;18(34):
pubmed: 23987829
J Virol. 2014 Oct;88(19):11297-303
pubmed: 25031349
Sci Data. 2017 Apr 11;4:170050
pubmed: 28398292
Euro Surveill. 2015;20(49):
pubmed: 26676406
Am J Trop Med Hyg. 2017 Jun;96(6):1318-1324
pubmed: 28719257
Epidemiol Health. 2015;37:e2015054
pubmed: 26971695
Emerg Infect Dis. 2017 Jun;23(6):898-905
pubmed: 28516865
Saudi Med J. 2017 Feb;38(2):196-200
pubmed: 28133694
Euro Surveill. 2018 Aug;23(32):
pubmed: 30107872
Emerg Infect Dis. 2014 Aug;20(8):1370-4
pubmed: 25062254
Front Public Health. 2017 Oct 19;5:276
pubmed: 29098145
Diagn Microbiol Infect Dis. 2017 Oct;89(2):106-111
pubmed: 28821364
Euro Surveill. 2014 Apr 24;19(16):20782
pubmed: 24786258
Euro Surveill. 2014 Apr 24;19(16):20781
pubmed: 24786259
Korean J Anesthesiol. 2016 Jun;69(3):287-91
pubmed: 27274377
Emerg Infect Dis. 2015 Jun;21(6):1019-22
pubmed: 25989145
Lancet. 2016 Sep 3;388(10048):994-1001
pubmed: 27402381
Clin Infect Dis. 2014 Dec 1;59(11):1511-8
pubmed: 25100864
Euro Surveill. 2015 Jun 18;20(24):
pubmed: 26111235
mBio. 2017 Apr 4;8(2):
pubmed: 28377531
Clin Infect Dis. 2015 Feb 1;60(3):378-80
pubmed: 25323703
Ann Thorac Med. 2017 Jul-Sep;12(3):217-218
pubmed: 28808497
Infect Chemother. 2015 Jun;47(2):120-2
pubmed: 26157591
Emerg Infect Dis. 2014 Sep;20(9):1527-30
pubmed: 25148113
Vector Borne Zoonotic Dis. 2017 Feb;17(2):155-159
pubmed: 28009529
Travel Med Infect Dis. 2015 Jul-Aug;13(4):311-4
pubmed: 26211569
Histopathology. 2018 Feb;72(3):516-524
pubmed: 28858401
J Intensive Care Med. 2016 Jun;31(5):344-8
pubmed: 25862629
Emerg Infect Dis. 2016 Aug;22(8):1395-402
pubmed: 27191038
Viruses. 2013 Oct 31;5(11):2679-89
pubmed: 24184965
Emerg Infect Dis. 2013 Oct;19(10):1697-9
pubmed: 24050621
Trans R Soc Trop Med Hyg. 2015 Aug;109(8):503-13
pubmed: 26142451
J Infect Public Health. 2018 May - Jun;11(3):331-338
pubmed: 28993171
Lancet Infect Dis. 2013 Sep;13(9):752-61
pubmed: 23891402
Clin Infect Dis. 2015 Feb 1;60(3):369-77
pubmed: 25323704
Euro Surveill. 2015 Jul 09;20(27):
pubmed: 26212063
Emerg Infect Dis. 2016 Jun;22(6):1086-9
pubmed: 27071076
BMC Infect Dis. 2017 Jul 14;17(1):498
pubmed: 28709419
J Infect Dis. 2017 Jun 15;215(12):1807-1815
pubmed: 28472421
Sci Data. 2014 Oct 23;1:140042
pubmed: 25984346
Virol J. 2017 Nov 22;14(1):230
pubmed: 29166910
Intervirology. 2017;60(1-2):53-55
pubmed: 28683463
J Infect Dis. 2016 Sep 1;214(5):712-21
pubmed: 27302191
Emerg Infect Dis. 2015 Feb;21(2):362-4
pubmed: 25626079
Science. 2016 Jan 1;351(6268):81-4
pubmed: 26678874
Infect Chemother. 2016 Jun;48(2):99-107
pubmed: 27433380
Sci Data. 2014 Sep 30;1:140036
pubmed: 25984344
Ann Saudi Med. 2016 Jan-Feb;36(1):78-80
pubmed: 26922692
Emerg Infect Dis. 2015 Dec;21(12):2197-200
pubmed: 26584223
Zoonoses Public Health. 2018 Sep;65(6):749-754
pubmed: 29855166
Int J Infect Dis. 2014 Jun;23:63-8
pubmed: 24699184
Euro Surveill. 2013 Dec 12;18(50):20662
pubmed: 24342516
Travel Med Infect Dis. 2016 Sep - Oct;14(5):464-470
pubmed: 27671972
Emerg Infect Dis. 2016 Jan;22(1):49-55
pubmed: 26692185
BMC Infect Dis. 2017 Nov 10;17(1):715
pubmed: 29126397
Virus Genes. 2015 Jun;50(3):509-13
pubmed: 25653016
Emerg Microbes Infect. 2017 Nov 8;6(11):e101
pubmed: 29116217
Epidemics. 2019 Dec;29:100350
pubmed: 31201040
Pediatr Infect Dis J. 2014 Sep;33(9):904-6
pubmed: 24763193
Emerg Infect Dis. 2015 Apr;21(4):699-701
pubmed: 25811546
Eur Rev Med Pharmacol Sci. 2018 Aug;22(15):4956-4961
pubmed: 30070331
J Mol Diagn. 2017 Nov;19(6):817-827
pubmed: 28807812
Sci Rep. 2019 May 14;9(1):7385
pubmed: 31089148
Emerg Infect Dis. 2018 May;24(5):926-928
pubmed: 29664373
Transbound Emerg Dis. 2014 Apr;61(2):105-8
pubmed: 24456414
Emerg Infect Dis. 2015 Nov;21(11):2084-7
pubmed: 26488745
Emerg Infect Dis. 2015 Nov;21(11):1981-8
pubmed: 26484549
One Health. 2018 May 04;5:65-68
pubmed: 29911167
Big Data. 2015 Dec 1;3(4):230-237
pubmed: 26858916
MMWR Morb Mortal Wkly Rep. 2014 May 16;63(19):431-6
pubmed: 24827411
Clin Exp Emerg Med. 2017 Jun 30;4(2):94-101
pubmed: 28717779
J Travel Med. 2018 Jan 1;25(1):
pubmed: 29232459
Infect Drug Resist. 2014 Nov 03;7:281-7
pubmed: 25395865
mBio. 2014 Feb 25;5(2):e00884-14
pubmed: 24570370
Emerg Infect Dis. 2017 Sep;23(9):1585-1589
pubmed: 28820379
PLoS One. 2017 Sep 13;12(9):e0184718
pubmed: 28902913
Jpn J Infect Dis. 2017 Jan 24;70(1):115-118
pubmed: 27169943
Ann Intern Med. 2014 Mar 18;160(6):389-97
pubmed: 24474051
Emerg Infect Dis. 2016 May;22(5):794-801
pubmed: 27089550
Int J Infect Dis. 2014 Dec;29:301-6
pubmed: 25303830
Int J Infect Dis. 2013 Sep;17(9):e668-72
pubmed: 23916548
Emerg Infect Dis. 2016 Nov;22(11):1915-1920
pubmed: 27767011
mBio. 2014 Jul 22;5(4):e01450-14
pubmed: 25053787
J Med Virol. 2018 Aug;90(8):1285-1289
pubmed: 29663439
J Infect Dis. 2017 Jun 1;215(11):1702-1705
pubmed: 28387845
J Infect Public Health. 2018 Nov - Dec;11(6):884-888
pubmed: 29396257
N Engl J Med. 2013 Aug 1;369(5):407-16
pubmed: 23782161
Epidemiol Infect. 2017 Jul;145(10):2030-2037
pubmed: 28478775
J Clin Neurol. 2017 Jul;13(3):227-233
pubmed: 28748673
Emerg Infect Dis. 2015 Aug;21(8):1422-5
pubmed: 26196891
Euro Surveill. 2017 Mar 30;22(13):
pubmed: 28382915
Int J Mol Sci. 2017 Oct 16;18(10):
pubmed: 29035289
Euro Surveill. 2017 Mar 16;22(11):
pubmed: 28333616
BMC Infect Dis. 2016 Apr 21;16:174
pubmed: 27097824
Clin Infect Dis. 2015 Mar 15;60(6):973-4
pubmed: 25516193
Epidemiol Health. 2015 Nov 14;37:e2015049
pubmed: 26725226
Emerg Microbes Infect. 2017 Jan 4;6(1):e1
pubmed: 28050021
Emerg Infect Dis. 2014 Jul;20(7):1260-2
pubmed: 24960574
Euro Surveill. 2014 May 08;19(18):
pubmed: 24832116
Clin Microbiol Infect. 2016 Feb;22(2):e11-e13
pubmed: 26384679
PLoS One. 2015 Apr 28;10(4):e0125809
pubmed: 25919137
J Clin Virol. 2015 Jan;62:69-71
pubmed: 25542475
Emerg Infect Dis. 2017 Jul;23(7):1079-1084
pubmed: 28585916
Eur J Emerg Med. 2015 Oct;22(5):316-20
pubmed: 26035278
Case Rep Infect Dis. 2017;2017:1262838
pubmed: 28948054
F1000Res. 2013 Jul 29;2:163
pubmed: 24555078
Int J Lab Hematol. 2017 Jun;39(3):272-278
pubmed: 28444873
N Engl J Med. 2015 Feb 26;372(9):846-54
pubmed: 25714162
N Engl J Med. 2014 Jun 26;370(26):2499-505
pubmed: 24896817
Am J Infect Control. 2017 May 1;45(5):502-507
pubmed: 28189413
Sci Data. 2014 May 27;1:140004
pubmed: 25977762
Euro Surveill. 2015;20(37):
pubmed: 26536463
Emerg Infect Dis. 2016 Dec;22(12):2171-2173
pubmed: 27224315
Clin Infect Dis. 2016 Oct 1;63(7):951-3
pubmed: 27358348
Emerg Infect Dis. 2017 Apr;23(4):682-685
pubmed: 28322710
Euro Surveill. 2017 Aug 17;22(33):
pubmed: 28840828
Euro Surveill. 2013 Jun 13;18(24):
pubmed: 23787161
Int J Infect Dis. 2017 May;58:37-42
pubmed: 28223175
Zhonghua Wei Zhong Bing Ji Jiu Yi Xue. 2015 Aug;27(8):630-4
pubmed: 26255008
J Infect Dis. 2014 Jun 15;209(12):1870-2
pubmed: 24474813
Mikrobiyol Bul. 2015 Jul;49(3):414-22
pubmed: 26313282
Emerg Infect Dis. 2014 Dec;20(12):2093-5
pubmed: 25425139
J Thorac Dis. 2016 Oct;8(10):E1190-E1194
pubmed: 27867585
Ann Saudi Med. 2014 Sep-Oct;34(5):396-400
pubmed: 25827696
Vector Borne Zoonotic Dis. 2019 Mar;19(3):174-192
pubmed: 30676269
BMC Infect Dis. 2016 Aug 25;16(1):448
pubmed: 27562369
BMC Infect Dis. 2016 Mar 02;16:105
pubmed: 26936356
J Infect. 2017 Oct;75(4):378-379
pubmed: 28606432
J Korean Med Sci. 2016 Apr;31(4):635-40
pubmed: 27051251
J Infect Chemother. 2018 Feb;24(2):150-152
pubmed: 29223614
Euro Surveill. 2013 Dec 12;18(50):20659
pubmed: 24342517
MMWR Morb Mortal Wkly Rep. 2016 Feb 19;65(6):163-4
pubmed: 26890816
Emerg Infect Dis. 2016 Nov;22(11):2020-2022
pubmed: 27606432
Am J Infect Control. 2018 Feb;46(2):165-168
pubmed: 28958446
Sci Data. 2019 Dec 13;6(1):318
pubmed: 31836720
Emerg Infect Dis. 2014 Jun;20(6):1012-5
pubmed: 24857749
Elife. 2016 Jul 14;5:
pubmed: 27414263
J Infect Chemother. 2017 Nov;23(11):769-773
pubmed: 28545936
J Hosp Infect. 2016 Jul;93(3):309-12
pubmed: 27210272
Emerg Microbes Infect. 2015 Dec 02;4(12):e74
pubmed: 26632876
Am J Transplant. 2015 Apr;15(4):1101-4
pubmed: 25716741
Genome Announc. 2016 Apr 28;4(2):
pubmed: 27125484
Epidemiol Health. 2015 Aug 07;37:e2015035
pubmed: 26300437
Clin Infect Dis. 2016 Aug 1;63(3):363-9
pubmed: 27090992
Euro Surveill. 2013 Sep 05;18(36):pii=20574
pubmed: 24079378
J Chemother. 2018 May;30(3):179-182
pubmed: 29385908
Emerg Microbes Infect. 2016 Dec 21;5(12):e128
pubmed: 27999424
Emerg Infect Dis. 2016 Mar;22(3):515-7
pubmed: 26890613
Clin Infect Dis. 2017 May 15;64(suppl_2):S167-S170
pubmed: 28475787

Auteurs

Rebecca E Ramshaw (RE)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Ian D Letourneau (ID)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Amy Y Hong (AY)

Bloomberg School of Public Health, Johns Hopkins University, 615N Wolfe St, Baltimore, MD, 21205, United States.

Julia Hon (J)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Julia D Morgan (JD)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Joshua C P Osborne (JCP)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Shreya Shirude (S)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

Maria D Van Kerkhove (MD)

Department of Infectious Hazards Management, Health Emergencies Programme, World Health Organization, Avenue Appia 20, 1211, Geneva, Switzerland.

Simon I Hay (SI)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.
Department of Health Metrics Sciences, School of Medicine, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States.

David M Pigott (DM)

Institute for Health Metrics and Evaluation, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States. pigottdm@uw.edu.
Department of Health Metrics Sciences, School of Medicine, University of Washington, 2301 5th Ave., Suite 600, Seattle, WA, United States. pigottdm@uw.edu.

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