Genetic characteristics of non-familial epilepsy.

Genetics Non-familial epilepsy Whole exome sequencing in silico analysis

Journal

PeerJ
ISSN: 2167-8359
Titre abrégé: PeerJ
Pays: United States
ID NLM: 101603425

Informations de publication

Date de publication:
2019
Historique:
received: 25 06 2019
accepted: 22 11 2019
entrez: 26 12 2019
pubmed: 26 12 2019
medline: 26 12 2019
Statut: epublish

Résumé

Knowledge of the genetic etiology of epilepsy can provide essential prognostic information and influence decisions regarding treatment and management, leading us into the era of precision medicine. However, the genetic basis underlying epileptogenesis or epilepsy pharmacoresistance is not well-understood, particularly in non-familial epilepsies with heterogeneous phenotypes that last until or start in adulthood. We sought to determine the contribution of known epilepsy-associated genes (EAGs) to the causation of non-familial epilepsies with heterogeneous phenotypes and to the genetic basis underlying epilepsy pharmacoresistance. We performed a multi-center study for whole exome sequencing-based screening of 178 selected EAGs in 243 non-familial adult patients with primarily focal epilepsy (122 drug-resistant and 121 drug-responsive epilepsies). The pathogenicity of each variant was assessed through a customized stringent filtering process and classified according to the American College of Medical Genetics and Genomics guidelines. Possible causal genetic variants of epilepsy were uncovered in 13.2% of non-familial patients with primarily focal epilepsy. The diagnostic yield according to the seizure onset age was 25% (2/8) in the neonatal and infantile period, 11.1% (14/126) in childhood and 14.7% (16/109) in adulthood. The higher diagnostic yields were from ion channel-related genes and mTOR pathway-related genes, which does not significantly differ from the results of previous studies on familial or early-onset epilepsies. These potentially pathogenic variants, which were identified in genes that have been mainly associated with early-onset epilepsies with severe phenotypes, were also linked to epilepsies that start in or last until adulthood in this study. This finding suggested the presence of one or more disease-modifying factors that regulate the onset time or severity of epileptogenesis. The target hypothesis of epilepsy pharmacoresistance was not verified in our study. Instead, neurodevelopment-associated epilepsy genes, such as We revealed a fraction of possible causal genetic variants of non-familial epilepsies in which genetic testing is usually overlooked. In this study, we highlight the importance of earlier identification of the genetic etiology of non-familial epilepsies, which leads us to the best treatment options in terms of precision medicine and to future neurobiological research for novel drug development. This should be considered a justification for physicians determining the hidden genetics of non-familial epilepsies that last until or start in adulthood.

Sections du résumé

BACKGROUND BACKGROUND
Knowledge of the genetic etiology of epilepsy can provide essential prognostic information and influence decisions regarding treatment and management, leading us into the era of precision medicine. However, the genetic basis underlying epileptogenesis or epilepsy pharmacoresistance is not well-understood, particularly in non-familial epilepsies with heterogeneous phenotypes that last until or start in adulthood.
METHODS METHODS
We sought to determine the contribution of known epilepsy-associated genes (EAGs) to the causation of non-familial epilepsies with heterogeneous phenotypes and to the genetic basis underlying epilepsy pharmacoresistance. We performed a multi-center study for whole exome sequencing-based screening of 178 selected EAGs in 243 non-familial adult patients with primarily focal epilepsy (122 drug-resistant and 121 drug-responsive epilepsies). The pathogenicity of each variant was assessed through a customized stringent filtering process and classified according to the American College of Medical Genetics and Genomics guidelines.
RESULTS RESULTS
Possible causal genetic variants of epilepsy were uncovered in 13.2% of non-familial patients with primarily focal epilepsy. The diagnostic yield according to the seizure onset age was 25% (2/8) in the neonatal and infantile period, 11.1% (14/126) in childhood and 14.7% (16/109) in adulthood. The higher diagnostic yields were from ion channel-related genes and mTOR pathway-related genes, which does not significantly differ from the results of previous studies on familial or early-onset epilepsies. These potentially pathogenic variants, which were identified in genes that have been mainly associated with early-onset epilepsies with severe phenotypes, were also linked to epilepsies that start in or last until adulthood in this study. This finding suggested the presence of one or more disease-modifying factors that regulate the onset time or severity of epileptogenesis. The target hypothesis of epilepsy pharmacoresistance was not verified in our study. Instead, neurodevelopment-associated epilepsy genes, such as
CONCLUSIONS CONCLUSIONS
We revealed a fraction of possible causal genetic variants of non-familial epilepsies in which genetic testing is usually overlooked. In this study, we highlight the importance of earlier identification of the genetic etiology of non-familial epilepsies, which leads us to the best treatment options in terms of precision medicine and to future neurobiological research for novel drug development. This should be considered a justification for physicians determining the hidden genetics of non-familial epilepsies that last until or start in adulthood.

Identifiants

pubmed: 31875159
doi: 10.7717/peerj.8278
pii: 8278
pmc: PMC6925949
doi:

Banques de données

figshare
['10.6084/m9.figshare.9988172']

Types de publication

Journal Article

Langues

eng

Pagination

e8278

Informations de copyright

© 2019 Kang et al.

Déclaration de conflit d'intérêts

The authors declare that they have no competing interests.

Références

J Neurogenet. 2018 Dec;32(4):313-315
pubmed: 29790814
Epilepsy Res. 2017 Mar;131:1-8
pubmed: 28199897
JAMA Neurol. 2014 May;71(5):650-1
pubmed: 24818677
Expert Rev Neurother. 2015 Oct;15(10):1161-70
pubmed: 26327193
Front Genet. 2018 Feb 07;9:20
pubmed: 29467791
Ann Neurol. 2000 Aug;48(2):264-7
pubmed: 10939581
Eur J Hum Genet. 2015 Mar;23(3):354-62
pubmed: 24848745
Front Neurol. 2017 Jul 06;8:301
pubmed: 28729850
Genome Med. 2015 Aug 25;7:91
pubmed: 26302787
BMC Med Genomics. 2018 Feb 01;11(1):6
pubmed: 29390993
Nat Genet. 2014 Jun;46(6):640-5
pubmed: 24747641
Am J Hum Genet. 2001 Jun;68(6):1327-32
pubmed: 11359211
Genet Med. 2019 Feb;21(2):398-408
pubmed: 30093711
Nat Rev Neurol. 2014 May;10(5):283-92
pubmed: 24733163
Epilepsia. 2015 May;56(5):707-16
pubmed: 25818041
PLoS Comput Biol. 2016 Apr 21;12(4):e1004873
pubmed: 27100738
Neurology. 2017 Jan 17;88(3):296-303
pubmed: 27986877
Epilepsia. 2018 Feb;59(2):381-388
pubmed: 29266188
Epilepsia. 2012 Aug;53(8):1387-98
pubmed: 22612257
J Neurosurg Pediatr. 2015 Dec;16(6):668-74
pubmed: 26339958
Genet Med. 2015 May;17(5):405-24
pubmed: 25741868
Neurology. 2016 Apr 26;86(17):1605-12
pubmed: 27029629
Hum Mol Genet. 2015 Apr 15;24(8):2125-37
pubmed: 25552646
J Neurogenet. 2015;29(4):174-7
pubmed: 26727662
Seizure. 2017 Jan;44:11-20
pubmed: 28007376
Epilepsia. 2013 Jul;54(7):1262-9
pubmed: 23662938
Epilepsy Res. 2018 Mar;141:48-55
pubmed: 29455050
Ann Clin Transl Neurol. 2014 Mar 1;1(3):190-198
pubmed: 24839611
Neurol Genet. 2015 May 14;1(1):e5
pubmed: 27066544
Acta Neuropathol Commun. 2014 Jul 08;2:71
pubmed: 25005575
PLoS One. 2018 Jun 20;13(6):e0199321
pubmed: 29924869
Epilepsy Behav. 2015 Mar;44:61-6
pubmed: 25625532
Ann Neurol. 2014 Apr;75(4):581-90
pubmed: 24591078
Nat Genet. 2013 Jul;45(7):825-30
pubmed: 23708187
Epilepsia. 2010 Jun;51(6):1069-77
pubmed: 19889013
Hum Mutat. 2016 Mar;37(3):235-41
pubmed: 26555599
Wien Klin Wochenschr. 2015 Aug;127(15-16):619-30
pubmed: 25860851
Epilepsia. 2014 Apr;55(4):475-82
pubmed: 24730690
Am J Med Genet C Semin Med Genet. 2018 Sep;178(3):365-373
pubmed: 30307123
Epilepsia. 2018 May;59(5):1062-1071
pubmed: 29655203
N Engl J Med. 2014 Jun 19;370(25):2418-25
pubmed: 24941179
Mol Syndromol. 2016 Sep;7(4):210-219
pubmed: 27781031
Ann Neurol. 2004 Sep;56(3):455-6
pubmed: 15349881

Auteurs

Kyung Wook Kang (KW)

Department of Neurology, Chonnam National University Medical School, Gwangju, South Korea.

Wonkuk Kim (W)

Department of Applied Statistics, Chung-Ang University, Seoul, South Korea.

Yong Won Cho (YW)

Department of Neurology, Keimyung University Dongsan Medical Center, Daegu, South Korea.

Sang Kun Lee (SK)

Department of Neurology, Seoul National University Hospital, Seoul, South Korea.

Ki-Young Jung (KY)

Department of Neurology, Seoul National University Hospital, Seoul, South Korea.

Wonchul Shin (W)

Department of Neurology, Kyung Hee University Hospital at Gangdong, Seoul, South Korea.

Dong Wook Kim (DW)

Department of Neurology, Konkuk University School of Medicine, Seoul, South Korea.

Won-Joo Kim (WJ)

Department of Neurology, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, South Korea.

Hyang Woon Lee (HW)

Department of Neurology, Ewha Womans University School of Medicine and Ewha Medical Research Institute, Seoul, South Korea.

Woojun Kim (W)

Department of Neurology, Seoul St. Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, South Korea.

Keuntae Kim (K)

Department of Neurology, Keimyung University Dongsan Medical Center, Daegu, South Korea.

So-Hyun Lee (SH)

Department of Biomedical Science, Chonnam National University Medical School, Gwangju, South Korea.

Seok-Yong Choi (SY)

Department of Biomedical Science, Chonnam National University Medical School, Gwangju, South Korea.

Myeong-Kyu Kim (MK)

Department of Neurology, Chonnam National University Medical School, Gwangju, South Korea.

Classifications MeSH