Field-resolved infrared spectroscopy of biological systems.
Journal
Nature
ISSN: 1476-4687
Titre abrégé: Nature
Pays: England
ID NLM: 0410462
Informations de publication
Date de publication:
01 2020
01 2020
Historique:
received:
01
02
2019
accepted:
29
10
2019
entrez:
3
1
2020
pubmed:
3
1
2020
medline:
15
4
2020
Statut:
ppublish
Résumé
The proper functioning of living systems and physiological phenotypes depends on molecular composition. Yet simultaneous quantitative detection of a wide variety of molecules remains a challenge
Identifiants
pubmed: 31894146
doi: 10.1038/s41586-019-1850-7
pii: 10.1038/s41586-019-1850-7
doi:
Substances chimiques
Biomarkers
0
Water
059QF0KO0R
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
52-59Commentaires et corrections
Type : CommentIn
Références
Geyer, P. E., Holdt, L. M., Teupser, D. & Mann, M. Revisiting biomarker discovery by plasma proteomics. Mol. Syst. Biol. 13, 942 (2017).
pubmed: 28951502
pmcid: 5615924
Barth, A. & Haris, P. I. Biological and Biomedical Infrared Spectroscopy (IOS Press, 2009).
Lasch, P. & Kneipp, J. Biomedical Vibrational Spectroscopy (Wiley, 2010).
Baker, M. J. et al. Developing and understanding biofluid vibrational spectroscopy: a critical review. Chem. Soc. Rev. 45, 1803–1818 (2016).
pubmed: 26612430
Hasin, Y., Seldin, M. & Lusis, A. Multi-omics approaches to disease. Genome Biol. 18, 83 (2017).
pubmed: 28476144
pmcid: 5418815
Chen, R. et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 148, 1293–1307 (2012).
pubmed: 22424236
pmcid: 3341616
Türker-Kaya, S. & Huck, C. A review of mid-infrared and near-infrared imaging: principles, concepts and applications in plant tissue analysis. Molecules 22, 168 (2017).
pmcid: 6155813
Doherty, J., Cinque, G. & Gardner, P. Single-cell analysis using Fourier transform infrared microspectroscopy. Appl. Spectrosc. Rev. 52, 560–587 (2017).
Laubereau, A. & Kaiser, W. Vibrational dynamics of liquids and solids investigated by picosecond light pulses. Rev. Mod. Phys. 50, 607–665 (1978).
Sell, A., Scheu, R., Leitenstorfer, A. & Huber, R. Field-resolved detection of phase-locked infrared transients from a compact Er:fiber system tunable between 55 and 107 THz. Appl. Phys. Lett. 93, 251107 (2008).
Coddington, I., Swann, W. C. & Newbury, N. R. Time-domain spectroscopy of molecular free-induction decay in the infrared. Opt. Lett. 35, 1395–1397 (2010).
pubmed: 20436581
Kowligy, A. S. et al. Infrared electric field sampled frequency comb spectroscopy. Sci. Adv. 5, eaaw8794 (2019).
pubmed: 31187063
pmcid: 6555623
Wu, Q. & Zhang, X.-C. Free-space electro-optic sampling of terahertz beams. Appl. Phys. Lett. 67, 3523–3525 (1995).
Nahata, A., Weling, A. S. & Heinz, T. F. A wideband coherent terahertz spectroscopy system using optical rectification and electro-optic sampling. Appl. Phys. Lett. 69, 2321–2323 (1996).
Pupeza, I. et al. High-power sub-two-cycle mid-infrared pulses at 100 MHz repetition rate. Nat. Photon. 9, 721–724 (2015).
Gianazza, E., Miller, I., Palazzolo, L., Parravicini, C. & Eberini, I. With or without you—proteomics with or without major plasma/serum proteins. J. Proteomics 140, 62–80 (2016).
pubmed: 27072114
Dębska, B. & Guzowska-Świder, B. Fuzzy definition of molecular fragments in chemical structures. J. Chem. Inf. Comput. Sci. 40, 325–329 (2000).
pubmed: 10761135
Demtröder, W. Molecular Physics (Wiley, 2005).
Movasaghi, Z., Rehman, S. & ur Rehman, Dr. I. Fourier transform infrared (FTIR) spectroscopy of biological tissues. Appl. Spectrosc. Rev. 43, 134–179 (2008).
Griffiths, P. R. & De Haseth, J. A. Fourier Transform Infrared Spectrometry (Wiley, 2007).
Keilmann, F., Gohle, C. & Holzwarth, R. Time-domain mid-infrared frequency-comb spectrometer. Opt. Lett. 29, 1542–1544 (2004).
pubmed: 15259740
Newbury, N. R., Coddington, I. & Swann, W. Sensitivity of coherent dual-comb spectroscopy. Opt. Express 18, 7929–7945 (2010).
pubmed: 20588636
Villares, G., Hugi, A., Blaser, S. & Faist, J. Dual-comb spectroscopy based on quantum-cascade-laser frequency combs. Nat. Commun. 5, 5192 (2014).
pubmed: 25307936
Schwaighofer, A. et al. Beyond Fourier transform infrared spectroscopy: external cavity quantum cascade laser-based mid-infrared transmission spectroscopy of proteins in the amide I and amide II region. Anal. Chem. 90, 7072–7079 (2018).
pubmed: 29762006
Haas, J., Catalán, E. V., Piron, P., Karlsson, M. & Mizaikoff, B. Infrared spectroscopy based on broadly tunable quantum cascade lasers and polycrystalline diamond waveguides. Analyst 143, 5112–5119 (2018).
pubmed: 30284560
Ollesch, J. et al. An infrared spectroscopic blood test for non-small cell lung carcinoma and subtyping into pulmonary squamous cell carcinoma or adenocarcinoma. Biomed. Spectrosc. Imaging 5, 129–144 (2016).
Brandstetter, M., Volgger, L., Genner, A., Jungbauer, C. & Lendl, B. Direct determination of glucose, lactate and triglycerides in blood serum by a tunable quantum cascade laser-based mid-IR sensor. Appl. Phys. B 110, 233–239 (2013).
Baker, M. J. et al. Using Fourier transform IR spectroscopy to analyze biological materials. Nat. Protocols 9, 1771–1791 (2014).
pubmed: 24992094
Martin, M. C. et al. 3D spectral imaging with synchrotron Fourier transform infrared spectro-microtomography. Nat. Methods 10, 861–864 (2013).
pubmed: 23913258
Rohleder, D. et al. Comparison of mid-infrared and Raman spectroscopy in the quantitative analysis of serum. J. Biomed. Opt. 10, 031108 (2005).
pubmed: 16229633
Bhargava, R. Infrared spectroscopic imaging: the next generation. Appl. Spectrosc. 66, 1091–1120 (2012).
pubmed: 23031693
pmcid: 3756188
Quaroni, L., Zlateva, T., Wehbe, K. & Cinque, G. Infrared imaging of small molecules in living cells: from in vitro metabolic analysis to cytopathology. Faraday Discuss. 187, 259–271 (2016).
pubmed: 27049435
Bonnier, F. et al. Ultra-filtration of human serum for improved quantitative analysis of low molecular weight biomarkers using ATR-IR spectroscopy. Analyst 142, 1285–1298 (2017).
pubmed: 28067340
Haas, J. & Mizaikoff, B. Advances in mid-infrared spectroscopy for chemical analysis. Annu. Rev. Anal. Chem. 9, 45–68 (2016).
Lu, R. et al. High-sensitivity infrared attenuated total reflectance sensors for in situ multicomponent detection of volatile organic compounds in water. Nat. Protocols 11, 377–386 (2016).
pubmed: 26820794
Haase, K., Kröger-Lui, N., Pucci, A., Schönhals, A. & Petrich, W. Advancements in quantum cascade laser-based infrared microscopy of aqueous media. Faraday Discuss. 187, 119–134 (2016).
pubmed: 27032367
Haase, K., Kröger-Lui, N., Pucci, A., Schönhals, A. & Petrich, W. Real-time mid-infrared imaging of living microorganisms. J. Biophoton. 9, 61–66 (2016).
Gaida, C. et al. Watt-scale super-octave mid-infrared intrapulse difference frequency generation. Light Sci. Appl. 7, 94 (2018).
pubmed: 30510690
pmcid: 6258765
Seidel, M. et al. Multi-watt, multi-octave, mid-infrared femtosecond source. Science Advances 4, eaaq1526 (2018).
pubmed: 29713685
pmcid: 5917893
Butler, T. P. et al. Watt-scale 50-MHz source of single-cycle waveform-stable pulses in the molecular fingerprint region. Opt. Lett. 44, 1730–1733 (2019).
pubmed: 30933133
Pupeza, I. et al. Field-resolved spectroscopy in the molecular fingerprint region. In Lasers and Electro-Optics Europe & European Quantum Electronics Conf. (CLEO/Europe-EQEC) https://doi.org/10.1109/CLEOE-EQEC.2017.8086859 (IEEE, 2017).
Huber, M. et al. Detection sensitivity of field-resolved spectroscopy in the molecular fingerprint region. In Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC) https://doi.org/10.1109/CLEOE-EQEC.2017.8086921 (IEEE, 2017).
Timmers, H. et al. Molecular fingerprinting with bright, broadband infrared frequency combs. Optica 5, 727–732 (2018).
Muraviev, A. V., Smolski, V. O., Loparo, Z. E. & Vodopyanov, K. L. Massively parallel sensing of trace molecules and their isotopologues with broadband subharmonic mid-infrared frequency combs. Nat. Photon. 12, 209–214 (2018).
Udem, T., Holzwarth, R. & Hänsch, T. W. Optical frequency metrology. Nature 416, 233–237 (2002).
pubmed: 11894107
Ye, J. & Cundiff, S. T. Femtosecond Optical Frequency Comb: Principle, Operation, And Applications (Springer, 2005).
Schweinberger, W. et al. Interferometric delay tracking for low-noise Mach-Zehnder-type scanning measurements. Opt. Express 27, 4789–4798 (2019).
pubmed: 30876089
Schubert, O. et al. Rapid-scan acousto-optical delay line with 34 kHz scan rate and 15 as precision. Opt. Lett. 38, 2907–2910 (2013).
pubmed: 23903176
Birarda, G. et al. IR-Live: fabrication of a low-cost plastic microfluidic device for infrared spectromicroscopy of living cells. Lab Chip 16, 1644–1651 (2016).
pubmed: 27040369
Max, J.-J. & Chapados, C. Glucose and fructose hydrates in aqueous solution by IR spectroscopy. J. Phys. Chem. A 111, 2679–2689 (2007).
pubmed: 17388373
Tsurumachi, N., Fuji, T., Kawato, S., Hattori, T. & Nakatsuka, H. Interferometric observation of femtosecond free induction decay. Opt. Lett. 19, 1867–1869 (1994).
pubmed: 19855680
Gallot, G. & Grischkowsky, D. Electro-optic detection of terahertz radiation. J. Opt. Soc. Am. B 16, 1204–1212 (1999).
Hobbs, P. C. D. Ultrasensitive laser measurements without tears. Appl. Opt. 36, 903–920 (1997).
pubmed: 18250756
Foltynowicz, A., Ban, T., Masłowski, P., Adler, F. & Ye, J. Quantum-noise-limited optical frequency comb spectroscopy. Phys. Rev. Lett. 107, 233002 (2011).
pubmed: 22182084
Buberl, T. Broadband interferometric subtraction of optical fields. Opt. Express 27, 2432–2443 (2019).
pubmed: 30732280
Tomberg, T., Muraviev, A., Ru, Q. & Vodopyanov, K. L. Background-free broadband absorption spectroscopy based on interferometric suppression with a sign-inverted waveform. Optica 6, 147–151 (2019).
Fritsch, K., Poetzlberger, M., Pervak, V., Brons, J. & Pronin, O. All-solid-state multipass spectral broadening to sub-20 fs. Opt. Lett. 43, 4643–4646 (2018).
pubmed: 30272703
Schulte, J., Sartorius, T., Weitenberg, J., Vernaleken, A. & Russbueldt, P. Nonlinear pulse compression in a multi-pass cell. Opt. Lett. 41, 4511–4514 (2016).
pubmed: 27749868
Huber, M. et al. Active intensity noise suppression for a broadband mid-infrared laser source. Opt. Express 25, 22499–22509 (2017).
pubmed: 29041559
Lanin, A. A., Voronin, A. A., Fedotov, A. B. & Zheltikov, A. M. Time-domain spectroscopy in the mid-infrared. Sci. Rep. 4, 1–8 (2014).