HisCoM-PAGE: software for hierarchical structural component models for pathway analysis of gene expression data.
gene expression
hierarchical component model
pathway analysis
survival phenotype
Journal
Genomics & informatics
ISSN: 1598-866X
Titre abrégé: Genomics Inform
Pays: Korea (South)
ID NLM: 101223836
Informations de publication
Date de publication:
Dec 2019
Dec 2019
Historique:
received:
19
11
2019
accepted:
22
11
2019
entrez:
4
1
2020
pubmed:
4
1
2020
medline:
4
1
2020
Statut:
ppublish
Résumé
To identify pathways associated with survival phenotypes using gene expression data, we recently proposed the hierarchical structural component model for pathway analysis of gene expression data (HisCoM-PAGE) method. The HisCoM-PAGE software can consider hierarchical structural relationships between genes and pathways and analyze multiple pathways simultaneously. It can be applied to various types of gene expression data, such as microarray data or RNA sequencing data. We expect that the HisCoM-PAGE software will make our method more easily accessible to researchers who want to perform pathway analysis for survival times.
Identifiants
pubmed: 31896245
pii: GI.2019.17.4.e45
doi: 10.5808/GI.2019.17.4.e45
pmc: PMC6944051
doi:
Types de publication
Journal Article
Langues
eng
Pagination
e45Subventions
Organisme : Ministry of Science and Technology
Organisme : Korea Health Industry Development Institute
Organisme : Ministry of Health and Welfare
ID : HI16C2037
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