Metatranscriptomic Sequencing of a Cyanobacterial Soil-Surface Consortium with and without a Diverse Underlying Soil Microbiome.


Journal

Microbiology resource announcements
ISSN: 2576-098X
Titre abrégé: Microbiol Resour Announc
Pays: United States
ID NLM: 101728794

Informations de publication

Date de publication:
02 Jan 2020
Historique:
entrez: 4 1 2020
pubmed: 4 1 2020
medline: 4 1 2020
Statut: epublish

Résumé

Soil surface consortia are easily observed and sampled, allowing examination of their interactions with soil microbiomes. Here, we present metatranscriptomic sequences from Dark Green 1 (DG1), a cyanobacterium-based soil surface consortium, in the presence and absence of an underlying soil microbiome and/or urea.

Identifiants

pubmed: 31896648
pii: 9/1/e01361-19
doi: 10.1128/MRA.01361-19
pmc: PMC6940300
pii:
doi:

Types de publication

Journal Article

Langues

eng

Références

Bioinformatics. 2015 May 15;31(10):1674-6
pubmed: 25609793
Stand Genomic Sci. 2015 Oct 26;10:86
pubmed: 26512311
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677
pubmed: 30289528
Trends Biotechnol. 2019 Feb;37(2):140-151
pubmed: 30587413

Auteurs

Terrence H Bell (TH)

Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, Pennsylvania, USA thb15@psu.edu.
Intercollege Graduate Degree Program in Ecology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania, USA.

Ryan V Trexler (RV)

Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, Pennsylvania, USA.

Xin Peng (X)

Intercollege Graduate Degree Program in Ecology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania, USA.
Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania, USA.

Marcel Huntemann (M)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Alicia Clum (A)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Brian Foster (B)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Bryce Foster (B)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Simon Roux (S)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Krishnaveni Palaniappan (K)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Neha Varghese (N)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Supratim Mukherjee (S)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

T B K Reddy (TBK)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Chris Daum (C)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Alex Copeland (A)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Natalia N Ivanova (NN)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Nikos C Kyrpides (NC)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Christa Pennacchio (C)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Emiley A Eloe-Fadrosh (EA)

Department of Energy Joint Genome Institute, Walnut Creek, California, USA.

Mary Ann Bruns (MA)

Intercollege Graduate Degree Program in Ecology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania, USA.
Department of Ecosystem Science and Management, The Pennsylvania State University, University Park, Pennsylvania, USA.

Classifications MeSH