Dissection of flag leaf metabolic shifts and their relationship with those occurring simultaneously in developing seed by application of non-targeted metabolomics.
Journal
PloS one
ISSN: 1932-6203
Titre abrégé: PLoS One
Pays: United States
ID NLM: 101285081
Informations de publication
Date de publication:
2020
2020
Historique:
received:
25
09
2019
accepted:
20
12
2019
entrez:
25
1
2020
pubmed:
25
1
2020
medline:
11
4
2020
Statut:
epublish
Résumé
Rice flag leaves are major source organs providing more than half of the nutrition needed for rice seed development. The dynamic metabolic changes in rice flag leaves and the detailed metabolic relationship between source and sink organs in rice, however, remain largely unknown. In this study, the metabolic changes of flag leaves in two japonica and two indica rice cultivars were investigated using non-targeted metabolomics approach. Principal component analysis (PCA) revealed that flag leaf metabolomes varied significantly depending on both species and developmental stage. Only a few of the metabolites in flag leaves displayed the same change pattern across the four tested cultivars along the process of seed development. Further association analysis found that levels of 45 metabolites in seeds that are associated with human nutrition and health correlated significantly with their levels in flag leaves. Comparison of metabolomics of flag leaves and seeds revealed that some flavonoids were specific or much higher in flag leaves while some lipid metabolites such as phospholipids were much higher in seeds. This reflected not only the function of the tissue specific metabolism but also the different physiological properties and metabolic adaptive features of these two tissues.
Identifiants
pubmed: 31978163
doi: 10.1371/journal.pone.0227577
pii: PONE-D-19-26924
pmc: PMC6980602
doi:
Types de publication
Journal Article
Research Support, Non-U.S. Gov't
Langues
eng
Sous-ensembles de citation
IM
Pagination
e0227577Déclaration de conflit d'intérêts
We have the following interests: Yue Song and Shen-An Chan are employed by Agilent Technologies Incorporated Company. There are no patents, products in development or marketed products to declare. This does not alter our adherence to all the PLOS ONE policies on sharing data and materials.
Références
Proc Natl Acad Sci U S A. 2018 May 22;115(21):E4920-E4929
pubmed: 29735713
J Integr Plant Biol. 2014 Sep;56(9):876-86
pubmed: 24730595
Int J Mol Sci. 2018 Aug 19;19(8):null
pubmed: 30126259
Bioinformatics. 2007 Jul 15;23(14):1792-800
pubmed: 17519250
Plant Cell. 2016 Oct;28(10):2603-2615
pubmed: 27758894
Mol Plant. 2011 May;4(3):453-63
pubmed: 21324969
Annu Rev Plant Physiol Plant Mol Biol. 2001 Jun;52:335-361
pubmed: 11337402
Cell. 2018 Apr 5;173(2):286-287
pubmed: 29625046
Plant Biotechnol J. 2003 Jan;1(1):59-70
pubmed: 17147681
Sci Rep. 2016 Feb 10;6:20942
pubmed: 26860358
Anal Chem. 2018 Mar 6;90(5):3156-3164
pubmed: 29381867
Int J Mol Sci. 2016 Jun 01;17(6):
pubmed: 27258266
Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20320-5
pubmed: 24259710
Metabolomics. 2014;10(4):543-555
pubmed: 25057267
Bioinformatics. 2008 Mar 1;24(5):732-7
pubmed: 18204057
Planta. 2009 Oct;230(5):985-1002
pubmed: 19697058
Plant Physiol. 2005 Apr;137(4):1463-73
pubmed: 15793068
Mol Plant. 2010 Nov;3(6):997-1011
pubmed: 21081651
J Integr Plant Biol. 2016 Nov;58(11):903-913
pubmed: 27015846
Yi Chuan Xue Bao. 2006 Sep;33(9):824-32
pubmed: 16980129
Plant Physiol. 2012 Dec;160(4):1795-807
pubmed: 23073696
Annu Rev Plant Biol. 2013;64:189-217
pubmed: 23451786
J Integr Plant Biol. 2010 Jan;52(1):98-111
pubmed: 20074144
Plant Cell. 2005 Jul;17(7):2077-88
pubmed: 15951490
J Agric Food Chem. 2003 Jul 16;51(15):4400-3
pubmed: 12848517
Phytochemistry. 2011 Jun;72(9):838-43
pubmed: 21440919
Plant Cell. 2013 Aug;25(8):3133-45
pubmed: 23995084
J Biol Chem. 2003 Aug 8;278(32):29442-53
pubmed: 12759349
Plant Cell. 2011 Aug;23(8):2991-3006
pubmed: 21828290
Plant J. 2016 Sep;87(5):442-54
pubmed: 27155400
Plant Biol (Stuttg). 2005 Nov;7(6):581-91
pubmed: 16388461
Plant Physiol. 2013 Jul;162(3):1290-310
pubmed: 23696093
Plant Cell. 2012 Dec;24(12):5123-41
pubmed: 23221596
Gene. 2013 Nov 10;530(2):185-92
pubmed: 23994682
Plant Mol Biol. 2004 May;55(2):281-95
pubmed: 15604681
J Exp Bot. 2008;59(13):3675-89
pubmed: 18791197
Nat Protoc. 2006;1(1):387-96
pubmed: 17406261
J Plant Physiol. 2010 Nov 1;167(16):1380-9
pubmed: 20663584
Plant Physiol Biochem. 2013 Nov;72:35-45
pubmed: 23583204
Nat Genet. 2014 Jul;46(7):714-21
pubmed: 24908251
Curr Opin Plant Biol. 2005 Jun;8(3):301-7
pubmed: 15860427
Annu Rev Plant Biol. 2016 Apr 29;67:153-78
pubmed: 26735064
Annu Rev Plant Biol. 2010;61:421-42
pubmed: 20192739
Sci Adv. 2018 May 30;4(5):eaar4509
pubmed: 29854946
Biosci Biotechnol Biochem. 2016 Jul;80(7):1283-93
pubmed: 26940949
J Mass Spectrom. 2010 Jul;45(7):703-14
pubmed: 20623627
Bioinformatics. 2005 Jul 1;21(13):3043-8
pubmed: 15890747
Genome Biol. 2004;5(3):212
pubmed: 15003110
J Exp Bot. 2012 Aug;63(13):4647-70
pubmed: 22732107
Proteomics. 2013 Jun;13(12-13):1784-800
pubmed: 23483697
J Exp Bot. 2011 Nov;62(15):5623-32
pubmed: 21865177
Plant Biotechnol J. 2003 Jan;1(1):3-22
pubmed: 17147676
Theor Appl Genet. 2011 Dec;123(8):1319-30
pubmed: 21830109
Mol Plant. 2015 Jan;8(1):111-21
pubmed: 25578276