Deep Learning Features Improve the Performance of a Radiomics Signature for Predicting KRAS Status in Patients with Colorectal Cancer.


Journal

Academic radiology
ISSN: 1878-4046
Titre abrégé: Acad Radiol
Pays: United States
ID NLM: 9440159

Informations de publication

Date de publication:
11 2020
Historique:
received: 05 11 2019
revised: 07 12 2019
accepted: 11 12 2019
pubmed: 27 1 2020
medline: 1 12 2020
entrez: 27 1 2020
Statut: ppublish

Résumé

We assess the performance of a model combining a deep convolutional neural network and a hand-crafted radiomics signature for predicting KRAS status in patients with colorectal cancer (CRC). The primary cohort consisted of 279 patients with clinicopathologically confirmed CRC between April 2011 and April 2015. Portal venous phase computed tomographic images were analyzed to extract traditional hand-crafted radiomics features as well as deep learning features. A Wilcoxon rank sum test, the minimum redundancy maximum relevance algorithm, and multivariable logistic regression analysis were used to select features and build a radiomics signature. A combined model was then developed using multivariable logistic regression analysis. An independent validation cohort of 119 patients from May 2015 to April 2016 was used to confirm the combined model's predictive performance. The C-index of hand-crafted radiomics signature's discriminative ability was 0.719 (95% confidence interval, CI: 0.658-0.776) for the primary cohort and 0.720 (95% CI: 0.625-0.813) for the validation cohort. The C-index of the deep radiomics signature's discriminative ability was 0.754 (95% CI: 0.696-0.813) for the primary cohort and 0.786 (95% CI: 0.702-0.863) for the validation cohort. The combined model, which merged the hand-crafted radiomics features and deep radiomics features, achieve a C-index of 0.815 (95% CI: 0.766-0.868) for the primary cohort and 0.832 (95% CI: 0.762-0.905) for the validation cohort. This study presents a model that incorporates the hand-crafted and deep radiomics signature, which can be used for individualized preoperative prediction of KRAS mutations in patients with CRC.

Identifiants

pubmed: 31982342
pii: S1076-6332(19)30621-X
doi: 10.1016/j.acra.2019.12.007
pii:
doi:

Substances chimiques

KRAS protein, human 0
Proto-Oncogene Proteins p21(ras) EC 3.6.5.2

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e254-e262

Informations de copyright

Copyright © 2020 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.

Auteurs

Xiaomei Wu (X)

School of Medicine, South China University of Technology, Guangzhou, Guangdong Province, China; Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Yajun Li (Y)

School of Computer Science Engineering, South China University of Technology, Guangzhou, Guangdong Province, China.

Xin Chen (X)

Department of Radiology, Guangzhou First People's Hospital, Guangzhou, Guangdong Province, China.

Yanqi Huang (Y)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Lan He (L)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Ke Zhao (K)

School of Medicine, South China University of Technology, Guangzhou, Guangdong Province, China; Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Xiaomei Huang (X)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China; Southern Medical University, Guangzhou, Guangdong Province, PR China.

Wen Zhang (W)

Southern Medical University, Guangzhou, Guangdong Province, PR China.

Yucun Huang (Y)

Southern Medical University, Guangzhou, Guangdong Province, PR China.

Yexing Li (Y)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China; Shantou University, Shantou, Guangdong Province, PR China.

Mengyi Dong (M)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China; Southern Medical University, Guangzhou, Guangdong Province, PR China.

Jia Huang (J)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China; Shantou University, Shantou, Guangdong Province, PR China.

Ting Xia (T)

School of Medicine, South China University of Technology, Guangzhou, Guangdong Province, China; Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Changhong Liang (C)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China.

Zaiyi Liu (Z)

Department of Radiology, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, 106 Zhongshan Er Road, Guangzhou, Guangdong Province, China. Electronic address: zyliu@163.com.

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Classifications MeSH