Zwiesel bat banyangvirus, a potentially zoonotic Huaiyangshan banyangvirus (Formerly known as SFTS)-like banyangvirus in Northern bats from Germany.
Journal
Scientific reports
ISSN: 2045-2322
Titre abrégé: Sci Rep
Pays: England
ID NLM: 101563288
Informations de publication
Date de publication:
28 Jan 2020
28 Jan 2020
Historique:
received:
31
10
2019
accepted:
10
01
2020
entrez:
30
1
2020
pubmed:
30
1
2020
medline:
3
6
2020
Statut:
epublish
Résumé
Bats are reservoir hosts for several emerging and re-emerging viral pathogens causing morbidity and mortality in wildlife, animal stocks and humans. Various viruses within the family Phenuiviridae have been detected in bats, including the highly pathogenic Rift Valley fever virus and Malsoor virus, a novel Banyangvirus with close genetic relation to Huaiyangshan banyangvirus (BHAV)(former known as Severe fever with thrombocytopenia syndrome virus, SFTSV) and Heartland virus (HRTV), both of which have caused severe disease with fatal casualties in humans. In this study we present the whole genome of a novel Banyangvirus, named Zwiesel bat banyangvirus, revealed through deep sequencing of the Eptesicus nilssonii bat virome. The detection of the novel bat banyangvirus, which is in close phylogenetic relationship with the pathogenic HRTV and BHAV, underlines the possible impact of emerging phenuiviruses on public health.
Identifiants
pubmed: 31992832
doi: 10.1038/s41598-020-58466-w
pii: 10.1038/s41598-020-58466-w
pmc: PMC6987236
doi:
Types de publication
Journal Article
Langues
eng
Sous-ensembles de citation
IM
Pagination
1370Références
Yu, X.-J. et al. Fever with Thrombocytopenia Associated with a Novel Bunyavirus in China. N. Engl. J. Med. 364, 1523–1532, https://doi.org/10.1056/NEJMoa1010095 (2011).
doi: 10.1056/NEJMoa1010095
pubmed: 21410387
pmcid: 3113718
McMullan, L. K. et al. A New Phlebovirus Associated with Severe Febrile Illness in Missouri. N. Engl. J. Med. 367, 834–841, https://doi.org/10.1056/NEJMoa1203378 (2012).
doi: 10.1056/NEJMoa1203378
pubmed: 22931317
Charrel, R. N. et al. Emergence of Toscana Virus in Europe. Emerg. Infect. Dis. 11, 1657–1663, https://doi.org/10.3201/eid1111.050869 (2005).
doi: 10.3201/eid1111.050869
pubmed: 16318715
pmcid: 3367371
Zhang, Y. Z. et al. Hemorrhagic fever caused by a novel Bunyavirus in China: pathogenesis and correlates of fatal outcome. Clin. Infect. Dis. 54, 527–533, https://doi.org/10.1093/cid/cir804 (2012).
doi: 10.1093/cid/cir804
pubmed: 22144540
Kye-Hyung, K. et al. Severe Fever with Thrombocytopenia Syndrome, South Korea, 2012. Emerg. Infect. Dis. 19, 1892, https://doi.org/10.3201/eid1911.130792 (2013).
doi: 10.3201/eid1911.130792
Takahashi, T. et al. The First Identification and Retrospective Study of Severe Fever With Thrombocytopenia Syndrome in Japan. J. Infect. Dis. 209, 816–827, https://doi.org/10.1093/infdis/jit603 (2014).
doi: 10.1093/infdis/jit603
pubmed: 24231186
Savage, H. M. et al. First Detection of Heartland Virus (Bunyaviridae: Phlebovirus) from Field Collected Arthropods. Am. J. Trop. Med. Hyg. 89, 445–452, https://doi.org/10.4269/ajtmh.13-0209 (2013).
doi: 10.4269/ajtmh.13-0209
pubmed: 23878186
pmcid: 3771279
Jianning, W. et al. Novel Phlebovirus with Zoonotic Potential Isolated from Ticks, Australia. Emerg. Infect. Dis. 20, 1040, https://doi.org/10.3201/eid2006.140003 (2014).
doi: 10.3201/eid2006.140003
Kohl, C. & Kurth, A. European Bats as Carriers of Viruses with Zoonotic Potential. Viruses 6, 3110 (2014).
doi: 10.3390/v6083110
Boiro, I., Konstaninov, O. K. & Numerov, A. D. Isolation of Rift Valley fever virus from bats in the Republic of Guinea. Bull. Soc. Pathol. Exot. Filiales 80, 62–67 (1987).
pubmed: 3607999
Mourya, D. T. et al. Malsoor Virus, a Novel Bat Phlebovirus, Is Closely Related to Severe Fever with Thrombocytopenia Syndrome Virus and Heartland Virus. J. Virol. 88, 3605–3609, https://doi.org/10.1128/jvi.02617-13 (2014).
doi: 10.1128/jvi.02617-13
pubmed: 24390329
pmcid: 3957954
Kohl, C. & Kurth, A. European bats as carriers of viruses with zoonotic potential. Viruses 6, 3110–3128, https://doi.org/10.3390/v6083110 (2014).
doi: 10.3390/v6083110
pubmed: 25123684
pmcid: 4147689
Baker, K. S. et al. Metagenomic study of the viruses of African straw-coloured fruit bats: Detection of a chiropteran poxvirus and isolation of a novel adenovirus. Virology 441, 95–106, https://doi.org/10.1016/j.virol.2013.03.014 (2013).
doi: 10.1016/j.virol.2013.03.014
pubmed: 23562481
pmcid: 3667569
Ge, X. et al. Metagenomic Analysis of Viruses from the Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China. J. Virol. 86, 4620–30, https://doi.org/10.1128/jvi.06671-11 (2012).
doi: 10.1128/jvi.06671-11
pubmed: 22345464
pmcid: 3318625
Gai, Z. et al. Person-to-person transmission of severe fever with thrombocytopenia syndrome bunyavirus through blood contact. Clin. Infect. Dis. 54, 249–252, https://doi.org/10.1093/cid/cir776 (2012).
doi: 10.1093/cid/cir776
pubmed: 22095565
Muhldorfer, K. et al. Diseases and causes of death in European bats: dynamics in disease susceptibility and infection rates. PLoS One 6, e29773, https://doi.org/10.1371/journal.pone.0029773 (2011).
doi: 10.1371/journal.pone.0029773
pubmed: 22216354
pmcid: 3247292
Kohl, C. et al. Protocol for Metagenomic Virus Detection in Clinical Specimens. Emerg. Infect. Dis. 21, 48–57, https://doi.org/10.3201/eid2101.140766 (2015).
doi: 10.3201/eid2101.140766
pubmed: 25532973
pmcid: 4285256
Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114–2120, https://doi.org/10.1093/bioinformatics/btu170 (2014).
doi: 10.1093/bioinformatics/btu170
pubmed: 4103590
pmcid: 4103590
Langmead, B. & Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, 357–359, https://doi.org/10.1038/nmeth.1923 (2012).
doi: 10.1038/nmeth.1923
pubmed: 22388286
pmcid: 22388286
Zerbino, D. R. & Birney, E. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821–829, https://doi.org/10.1101/gr.074492.107 (2008).
doi: 10.1101/gr.074492.107
pubmed: 2336801
pmcid: 2336801
Buchfink, B., Xie, C. & Huson, D. H. Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12, 59–60, https://doi.org/10.1038/nmeth.3176 (2015).
doi: 10.1038/nmeth.3176
pubmed: 25402007
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947–2948, https://doi.org/10.1093/bioinformatics/btm404 (2007).
doi: 10.1093/bioinformatics/btm404
pubmed: 17846036
Darriba, D., Taboada, G. L., Doallo, R. & Posada, D. jModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 9, 772–772, https://doi.org/10.1038/nmeth.2109 (2012).
doi: 10.1038/nmeth.2109
pubmed: 22847109
pmcid: 4594756
Huelsenbeck, J. P. & Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754–755, https://doi.org/10.1093/bioinformatics/17.8.754 (2001).
doi: 10.1093/bioinformatics/17.8.754
pubmed: 11524383
Elliott, R. M. & Brennan, B. Emerging phleboviruses. Curr. Opin. Virol. 5, 50–57, https://doi.org/10.1016/j.coviro.2014.01.011 (2014).
doi: 10.1016/j.coviro.2014.01.011
Elliott, R. M. & Schmaljohn, C. S. 42 Bunyaviridae. In: Fields, B. N., Knipe, D. M. & Howley, P. M. Fields Virology. 6
Kearse, M. et al. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649, https://doi.org/10.1093/bioinformatics/bts199 (2012).
doi: 10.1093/bioinformatics/bts199
pubmed: 3371832
pmcid: 3371832
Crabtree, M. B. et al. Infection and Transmission of Rift Valley Fever Viruses Lacking the NSs and/or NSm Genes in Mosquitoes: Potential Role for NSm in Mosquito. Infection. PLoS Negl. Trop. Dis. 6, e1639, https://doi.org/10.1371/journal.pntd.0001639 (2012).
doi: 10.1371/journal.pntd.0001639
pubmed: 22563517