Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis.
Journal
IEEE transactions on bio-medical engineering
ISSN: 1558-2531
Titre abrégé: IEEE Trans Biomed Eng
Pays: United States
ID NLM: 0012737
Informations de publication
Date de publication:
10 2020
10 2020
Historique:
pubmed:
30
1
2020
medline:
25
6
2021
entrez:
30
1
2020
Statut:
ppublish
Résumé
Feature dimensionality reduction plays an important role in radiomic studies with a large number of features. However, conventional radiomic approaches may suffer from noise, and feature dimensionality reduction techniques are not equipped to utilize latent supervision information of patient data under study, such as differences in patients, to learn discriminative low dimensional representations. To achieve robustness to noise and feature dimensionality reduction with improved discriminative power, we develop a robust collaborative clustering method to simultaneously cluster patients and radiomic features into distinct groups respectively under adaptive sparse regularization. Our method is built upon matrix tri-factorization enhanced by adaptive sparsity regularization for simultaneous feature dimensionality reduction and denoising. Particularly, latent grouping information of patients with distinct radiomic features is learned and utilized as supervision information to guide the feature dimensionality reduction, and noise in radiomic features is adaptively isolated in a Bayesian framework under a general assumption of Laplacian distributions of transform-domain coefficients. Experiments on synthetic data have demonstrated the effectiveness of the proposed approach in data clustering, and evaluation results on an FDG-PET/CT dataset of rectal cancer patients have demonstrated that the proposed method outperforms alternative methods in terms of both patient stratification and prediction of patient clinical outcomes.
Identifiants
pubmed: 31995474
doi: 10.1109/TBME.2020.2969839
pmc: PMC8048106
mid: NIHMS1684063
doi:
Types de publication
Journal Article
Research Support, N.I.H., Extramural
Langues
eng
Sous-ensembles de citation
IM
Pagination
2735-2744Subventions
Organisme : NIBIB NIH HHS
ID : R01 EB022573
Pays : United States
Organisme : NIH HHS
ID : S10 OD023495
Pays : United States
Organisme : NIBIB NIH HHS
ID : R01 EB009234
Pays : United States
Organisme : NCI NIH HHS
ID : U24 CA189523
Pays : United States
Organisme : NCI NIH HHS
ID : R21 CA223358
Pays : United States
Références
Uncertain Safe Util Machine Learn Med Imaging Clin Image Based Proced (2019). 2019 Oct;11840:146-154
pubmed: 31893285
Sci Rep. 2017 Apr 18;7:46349
pubmed: 28418006
Med Image Anal. 2020 Feb;60:101602
pubmed: 31760193
Magn Reson Imaging. 2012 Nov;30(9):1234-48
pubmed: 22898692
Int J Radiat Oncol Biol Phys. 2019 Oct 1;105(2):440-447
pubmed: 31201897
Inf Sci (N Y). 2017 Dec;418-419:652-667
pubmed: 30283157
J Pediatr Urol. 2019 Feb;15(1):75.e1-75.e7
pubmed: 30473474
Med Image Comput Comput Assist Interv. 2019 Oct;11767:583-592
pubmed: 32095790
Stat Med. 1997 Feb 28;16(4):385-95
pubmed: 9044528
Mol Imaging. 2014;13:
pubmed: 25248853
Proc IEEE Int Symp Biomed Imaging. 2018 Apr;2018:1487-1490
pubmed: 30079128
Sci Rep. 2015 Jun 05;5:11044
pubmed: 26251068
Acta Oncol. 2016 Aug;55(8):1047-52
pubmed: 27142064
Magn Reson Imaging. 2019 Dec;64:49-61
pubmed: 31071473
Proc IEEE Int Symp Biomed Imaging. 2019 Apr;2019:846-849
pubmed: 31929858
Radiology. 2016 Feb;278(2):563-77
pubmed: 26579733
Radiother Oncol. 2018 Nov;129(2):218-226
pubmed: 30473058
IEEE Trans Biomed Eng. 2016 May;63(5):1034-1043
pubmed: 26390440
IEEE Trans Pattern Anal Mach Intell. 2019 Apr;41(4):928-940
pubmed: 29993651
Lancet Oncol. 2010 Sep;11(9):835-44
pubmed: 20692872
IEEE Trans Biomed Eng. 2020 Feb;67(2):399-410
pubmed: 31034407
Clin Cancer Res. 2016 Nov 1;22(21):5256-5264
pubmed: 27185368
Philos Trans A Math Phys Eng Sci. 2016 Apr 13;374(2065):20150202
pubmed: 26953178
Cancer Chemother Rep. 1966 Mar;50(3):163-70
pubmed: 5910392
Phys Med Biol. 2015 Jul 21;60(14):5471-96
pubmed: 26119045
IEEE Trans Biomed Eng. 2017 Aug;64(8):1924-1934
pubmed: 27893377
Radiother Oncol. 2015 Mar;114(3):345-50
pubmed: 25746350
Stat Med. 1984 Apr-Jun;3(2):143-52
pubmed: 6463451
Proc IEEE Int Symp Biomed Imaging. 2019 Apr;2019:1303-1306
pubmed: 31803347
BMC Med Imaging. 2019 Aug 15;19(1):67
pubmed: 31416421
IEEE Trans Biomed Eng. 2016 Jun;63(6):1145-56
pubmed: 26441442
Radiology. 2016 Nov;281(2):382-391
pubmed: 27144536
Eur J Nucl Med Mol Imaging. 2016 Jul;43(8):1477-85
pubmed: 26896298
Transl Oncol. 2018 Feb;11(1):31-36
pubmed: 29156383