Highly accurate and explainable detection of specimen mix-up using a machine learning model.

anomaly detection data-mining delta-check method laboratory information system machine learning patient safety

Journal

Clinical chemistry and laboratory medicine
ISSN: 1437-4331
Titre abrégé: Clin Chem Lab Med
Pays: Germany
ID NLM: 9806306

Informations de publication

Date de publication:
25 02 2020
Historique:
received: 29 05 2019
accepted: 13 08 2019
entrez: 8 2 2020
pubmed: 8 2 2020
medline: 15 4 2021
Statut: ppublish

Résumé

Background Delta check is widely used for detecting specimen mix-ups. Owing to the inadequate specificity and sparseness of the absolute incidence of mix-ups, the positive predictive value (PPV) of delta check is considerably low as it is labor consuming to identify true mix-up errors among a large number of false alerts. To overcome this problem, we developed a new accurate detection model through machine learning. Methods Inspired by delta check, we decided to conduct comparisons with the past examinations and broaden the time range. Fifteen common items were selected from complete blood cell counts and biochemical tests. We considered examinations in which ≥11 among the 15 items were measured simultaneously in our hospital; we created individual partial time-series data of the consecutive examinations with a sliding window size of 4. The last examinations of the partial time-series data were shuffled to generate artificial mix-up cases. After splitting the dataset into development and validation sets, we allowed a gradient-boosting-decision-tree (GBDT) model to learn using the development set to detect whether the last examination results of the partial time-series data were artificial mixed-up results. The model's performance was evaluated on the validation set. Results The area under the receiver operating characteristic curve (ROC AUC) of our model was 0.9983 (bootstrap confidence interval [bsCI]: 0.9983-0.9985). Conclusions The GBDT model was more effective in detecting specimen mix-up. The improved accuracy will enable more facilities to perform more efficient and centralized mix-up detection, leading to improved patient safety.

Identifiants

pubmed: 32031970
doi: 10.1515/cclm-2019-0534
pii: cclm-2019-0534
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

375-383

Références

Lippi G, Chance JJ, Church S, Dazzi P, Fontana R, Giavarina D, et al. Preanalytical quality improvement: from dream to reality. Clin Chem Lab Med 2011;49:1113–26.
Lippi G, Blanckaert N, Bonini P, Green S, Kitchen S, Palicka V, et al. Causes, consequences, detection, and prevention of identification errors in laboratory diagnostics. Clin Chem Lab Med 2009;47:143–53.
Simundic A-M, Church S, Cornes MP, Grankvist K, Lippi G, Nybo M, et al. Compliance of blood sampling procedures with the CLSI H3-A6 guidelines: an observational study by the European Federation of Clinical Chemistry and Laboratory Medicine (EFLM) working group for the preanalytical phase (WG-PRE). Clin Chem Lab Med 2015;53:1321–31.
Yamashita T, Ichihara K, Miyamoto A. A novel weighted cumulative delta-check method for highly sensitive detection of specimen mix-up in the clinical laboratory. Clin Chem Lab Med 2013;51:781–9.
Randell EW, Yenice S. Delta checks in the clinical laboratory. Crit Rev Clin Lab Sci 2019;11:1–23.
Pedregosa F, Varoquaux G, Gramfort A, Michel V, Thirion B, Grisel O, et al. Scikit-learn: machine learning in Python. J Mach Learn Res 2011;12:2825–30.
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Lundberg MitaniSM, Erion GG, Lee S-I. Consistent individualized feature attribution for tree ensembles. http://arxiv.org/abs/1802.03888. Accessed: 30 May 2019.

Auteurs

Tomohiro Mitani (T)

Department of Biomedical Informatics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

Shunsuke Doi (S)

Department of Healthcare Information Management, The University of Tokyo Hospital, Tokyo, Japan.

Shinichiroh Yokota (S)

Department of Healthcare Information Management, The University of Tokyo Hospital, Tokyo, Japan.

Takeshi Imai (T)

Department of Biomedical Informatics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

Kazuhiko Ohe (K)

Department of Biomedical Informatics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.

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