Finding all maximal perfect haplotype blocks in linear time.
Haplotype block
Population genomics
Positional Burrows–Wheeler Transform
Selection coefficient
Journal
Algorithms for molecular biology : AMB
ISSN: 1748-7188
Titre abrégé: Algorithms Mol Biol
Pays: England
ID NLM: 101265088
Informations de publication
Date de publication:
2020
2020
Historique:
received:
18
10
2019
accepted:
28
01
2020
entrez:
15
2
2020
pubmed:
15
2
2020
medline:
15
2
2020
Statut:
epublish
Résumé
Recent large-scale community sequencing efforts allow at an unprecedented level of detail the identification of genomic regions that show signatures of natural selection. Traditional methods for identifying such regions from individuals' haplotype data, however, require excessive computing times and therefore are not applicable to current datasets. In 2019, Cunha et al. (Advances in bioinformatics and computational biology: 11th Brazilian symposium on bioinformatics, BSB 2018, Niterói, Brazil, October 30 - November 1, 2018, Proceedings, 2018. 10.1007/978-3-030-01722-4_3) suggested the
Identifiants
pubmed: 32055252
doi: 10.1186/s13015-020-0163-6
pii: 163
pmc: PMC7008532
doi:
Types de publication
Journal Article
Langues
eng
Pagination
2Informations de copyright
© The Author(s) 2020.
Déclaration de conflit d'intérêts
Competing interestsThe authors declare that they have no competing interests.
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