Inter-slice leakage and intra-slice aliasing in simultaneous multi-slice echo-planar images.


Journal

Brain structure & function
ISSN: 1863-2661
Titre abrégé: Brain Struct Funct
Pays: Germany
ID NLM: 101282001

Informations de publication

Date de publication:
Apr 2020
Historique:
received: 31 07 2019
accepted: 21 02 2020
pubmed: 7 3 2020
medline: 9 1 2021
entrez: 7 3 2020
Statut: ppublish

Résumé

Simultaneous multi-slice (SMS) imaging is a popular technique for increasing acquisition speed in echo-planar imaging (EPI) fMRI. However, SMS data are prone to motion sensitivity and slice leakage artefacts, which spread signal between simultaneously acquired slices. Relevant to motion sensitivity, artefacts from moving anatomic structures propagate along the phase-encoding (PE) direction. This is particularly relevant for eye movement. As signal from the eye is acquired along with signal from simultaneously excited slices during SMS, there is potential for signal to spread in-plane and between spatially remote slices. After identifying an artefact temporally coinciding with signal fluctuations in the eye and spatially distributed in correspondence with multiband slice acceleration and parallel imaging factors, we conducted a series of small experiments to investigate eye movement artefacts in SMS data and the contribution of PE direction to the invasiveness of these artefacts. Five healthy adult volunteers were scanned during a blinking task using a standard SMS-EPI protocol with posterior-to-anterior (P ≫ A), anterior-to-posterior (A ≫ P) or right-to-left (R ≫ L) PE direction. The intensity of signal fluctuations (artefact severity) was measured at expected artefact positions and control positions. We demonstrated a direct relationship between eye movements and artefact severity across expected artefact regions. Within-brain artefacts were apparent in P ≫ A- and A ≫ P-acquired data but not in R ≫ L data due to the shift in artefact positions. Further research into eye motion artefacts in SMS data is warranted but researchers should exercise caution with SMS protocols. We recommend rigorous piloting of SMS protocols and switching to R ≫ L/L ≫ R PE where feasible.

Identifiants

pubmed: 32140847
doi: 10.1007/s00429-020-02053-2
pii: 10.1007/s00429-020-02053-2
pmc: PMC7166208
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Pagination

1153-1158

Subventions

Organisme : Japan Society for the Promotion of Science
ID : 15H05401, 16H06406, and 18H01102
Organisme : Leverhulme Trust
ID : RPG-2016-146 and RL-2016-030

Références

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Auteurs

Carolyn Beth McNabb (CB)

School of Psychology and Clinical Language Sciences, University of Reading, Harry Pitt Building, Earley Gate, Reading, RG6 7BE, UK. c.b.mcnabb@reading.ac.uk.

Michael Lindner (M)

School of Psychology and Clinical Language Sciences, University of Reading, Harry Pitt Building, Earley Gate, Reading, RG6 7BE, UK.
Centre for Integrative Neuroscience and Neurodynamics, University of Reading, Earley Gate, Reading, RG6 7BE, UK.

Shan Shen (S)

Technical Support, University of Reading, Reading, UK.

Laura Grace Burgess (LG)

School of Psychology and Clinical Language Sciences, University of Reading, Harry Pitt Building, Earley Gate, Reading, RG6 7BE, UK.

Kou Murayama (K)

School of Psychology and Clinical Language Sciences, University of Reading, Harry Pitt Building, Earley Gate, Reading, RG6 7BE, UK.
Research Institute, Kochi University of Technology, Kami, Kochi, Japan.

Tom Johnstone (T)

School of Psychology and Clinical Language Sciences, University of Reading, Harry Pitt Building, Earley Gate, Reading, RG6 7BE, UK.
School of Health Sciences, Swinburne University of Technology, Hawthorn, VIC, 3122, Australia.

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Classifications MeSH