Complete mitochondrial genome of the Florida manatee (Trichechus manatus latirotris, Sirenia).
Journal
Genetics and molecular biology
ISSN: 1415-4757
Titre abrégé: Genet Mol Biol
Pays: Brazil
ID NLM: 100883590
Informations de publication
Date de publication:
2020
2020
Historique:
received:
27
07
2019
accepted:
15
12
2019
entrez:
7
3
2020
pubmed:
7
3
2020
medline:
7
3
2020
Statut:
epublish
Résumé
The Florida manatee (Trichechus manatus latirostris) is an endangered subspecies of the West Indian manatee (T. manatus), which inhabits inland and marine waters of southeastern United States. In this study, we assembled the mitochondrial genome (mtDNA) of the Florida manatee from whole genome shotgun reads. As a result, we show that the currently annotated T. manatus mtDNA belongs to a different species, the Amazonian manatee (T. inunguis). The newly assembled Florida manatee mtDNA is 16,881 bp in length, with 13 protein-coding genes, two ribosomal RNAs (rRNAs), 22 transfer RNAs (tRNAs) and one non-coding control region (D-loop). Phylogenetic analysis based on the control region indicates the newly assembled mtDNA is haplotype A01, characteristic of T. m. latirostris, while the current mtDNA associated with the Florida manatee genome assembly has a Ti02 haplotype that is found in Amazonian manatees and hybrids.
Identifiants
pubmed: 32142097
pii: S1415-47572019000500201
doi: 10.1590/1678-4685-GMB-2019-0210
pmc: PMC7197981
pii:
doi:
Types de publication
Journal Article
Langues
eng
Pagination
e20190210Références
Mol Phylogenet Evol. 2013 Nov;69(2):313-9
pubmed: 22982435
Nat Genet. 2015 Mar;47(3):272-5
pubmed: 25621460
Gene. 2008 Sep 15;421(1-2):37-51
pubmed: 18590805
J Comput Biol. 2012 May;19(5):455-77
pubmed: 22506599
An Acad Bras Cienc. 2019 Aug 26;91(suppl 3):e20190325
pubmed: 31460594
Mol Ecol. 2006 Feb;15(2):433-47
pubmed: 16448411
Bioinformatics. 2012 Jun 15;28(12):1647-9
pubmed: 22543367