Facilitating Growth through Frustration: Using Genomics Research in a Course-Based Undergraduate Research Experience.


Journal

Journal of microbiology & biology education
ISSN: 1935-7877
Titre abrégé: J Microbiol Biol Educ
Pays: United States
ID NLM: 101543341

Informations de publication

Date de publication:
2020
Historique:
received: 16 10 2019
accepted: 23 01 2020
entrez: 10 3 2020
pubmed: 10 3 2020
medline: 10 3 2020
Statut: epublish

Résumé

A hallmark of the research experience is encountering difficulty and working through those challenges to achieve success. This ability is essential to being a successful scientist, but replicating such challenges in a teaching setting can be difficult. The Genomics Education Partnership (GEP) is a consortium of faculty who engage their students in a genomics Course-Based Undergraduate Research Experience (CURE). Students participate in genome annotation, generating gene models using multiple lines of experimental evidence. Our observations suggested that the students' learning experience is continuous and recursive, frequently beginning with frustration but eventually leading to success as they come up with defendable gene models. In order to explore our "formative frustration" hypothesis, we gathered data from faculty via a survey, and from students via both a general survey and a set of student focus groups. Upon analyzing these data, we found that all three datasets mentioned frustration and struggle, as well as learning and better understanding of the scientific process. Bioinformatics projects are particularly well suited to the process of iteration and refinement because iterations can be performed quickly and are inexpensive in both time and money. Based on these findings, we suggest that a dynamic of "formative frustration" is an important aspect for a successful CURE.

Identifiants

pubmed: 32148609
doi: 10.1128/jmbe.v21i1.2005
pii: jmbe-21-6
pmc: PMC7048401
pii:
doi:

Types de publication

Journal Article

Langues

eng

Subventions

Organisme : NIGMS NIH HHS
ID : P20 GM103418
Pays : United States
Organisme : NIGMS NIH HHS
ID : R25 GM130517
Pays : United States

Informations de copyright

©2020 Author(s). Published by the American Society for Microbiology.

Références

PLoS Biol. 2015 Jul 07;13(7):e1002195
pubmed: 26151137
CBE Life Sci Educ. 2018 Spring;17(1):
pubmed: 29378752
PLoS Comput Biol. 2019 Apr 3;15(4):e1006682
pubmed: 30943207
Qual Health Res. 2005 Nov;15(9):1277-88
pubmed: 16204405
Psychol Bull. 1958 Mar;55(2):102-19
pubmed: 13527595
Science. 2008 Oct 31;322(5902):684-5
pubmed: 18974335
Psychol Bull. 1992 Nov;112(3):396-9
pubmed: 1438634
CBE Life Sci Educ. 2010 Spring;9(1):55-69
pubmed: 20194808
G3 (Bethesda). 2017 Aug 7;7(8):2439-2460
pubmed: 28667019
Trends Genet. 2017 Feb;33(2):81-85
pubmed: 27939750
CBE Life Sci Educ. 2018 Dec;17(4):ar57
pubmed: 30417757
CBE Life Sci Educ. 2014 Winter;13(4):602-6
pubmed: 25452483
CBE Life Sci Educ. 2019 Mar;18(1):ar10
pubmed: 30821601
CBE Life Sci Educ. 2011 Summer;10(2):123-31
pubmed: 21633057
Am Educ Res J. 2013 Aug;50(4):683-713
pubmed: 25190821
Bioinformatics. 2019 Nov 1;35(21):4422-4423
pubmed: 31070714
CBE Life Sci Educ. 2014 Spring;13(1):111-30
pubmed: 24591510
CBE Life Sci Educ. 2014 Spring;13(1):29-40
pubmed: 24591501
CBE Life Sci Educ. 2016 Summer;15(2):
pubmed: 27252296
G3 (Bethesda). 2015 Mar 04;5(5):719-40
pubmed: 25740935

Auteurs

David Lopatto (D)

Center for Teaching, Learning and Assessment, Grinnell College, Grinnell, IA 50112, USA.

Anne G Rosenwald (AG)

Biology, Georgetown University, Washington, DC 20057, USA.

Justin R DiAngelo (JR)

Division of Science, Penn State Berks, Reading, PA 19610, USA.

Amy T Hark (AT)

Biology, Muhlenberg College, Allentown, PA 18104, USA.

Matthew Skerritt (M)

Science, SUNY Corning Community College, Corning, NY 14830, USA.

Matthew Wawersik (M)

Biology, College of William and Mary, Williamsburg, VA 23187, USA.

Anna K Allen (AK)

Biology, Howard University, Washington, DC 20059, USA.

Consuelo Alvarez (C)

Biology, Longwood University, Farmville, VA 23909, USA.

Sara Anderson (S)

Biosciences, Minnesota State University Moorhead, Moorhead, MN 56563, USA.

Cindy Arrigo (C)

Biology, New Jersey City University, Jersey City, NJ 07305, USA.

Andrew Arsham (A)

Biology, Bemidji State University, Bemidji, MN 56601, USA.

Daron Barnard (D)

Biology, Worcester State University, Worcester, MA 01602, USA.

Christopher Bazinet (C)

Biological Sciences, St. John's University, Queens, NY 11439, USA.

James E J Bedard (JEJ)

Biology, University of the Fraser Valley, Abbotsford, BC, V2S 7M8, Canada.

Indrani Bose (I)

Biology, Western Carolina University, Cullowhee, NC 28723, USA.

John M Braverman (JM)

Biology, Saint Joseph's University, Philadelphia, PA 19131, USA.

Martin G Burg (MG)

Biomedical Sciences and Cell & Molecular Biology, Grand Valley State University, Allendale, MI 49401, USA.

Rebecca C Burgess (RC)

Biological Sciences, Stevenson University, Owings Mills, MD 21117, USA.

Paula Croonquist (P)

Biology, Anoka-Ramsey Community College, Coon Rapids, MN 55433, USA.

Chunguang Du (C)

Biology, Montclair State University, Montclair, NJ 07043, USA.

Sondra Dubowsky (S)

Biology, McLennan Community College, Waco, TX 76708, USA.

Heather Eisler (H)

Biology, University of the Cumberlands, Williamsburg, KY 40769, USA.

Matthew A Escobar (MA)

Biological Sciences, California State University San Marcos, CA 92096, USA.

Michael Foulk (M)

Biology, Mercyhurst University, Erie, PA 16546, USA.

Emily Furbee (E)

Biology, Washington and Jefferson College, Washington, PA 15301, USA.

Thomas Giarla (T)

Biology, Siena College, Loudonville, NY 12211, USA.

Rivka L Glaser (RL)

Biological Sciences, Stevenson University, Owings Mills, MD 21117, USA.

Anya L Goodman (AL)

Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA 93407, USA.

Yuying Gosser (Y)

Student Research and Scholarship, City College CUNY, New York, NY 10031, USA.

Adam Haberman (A)

Biology, University of San Diego, San Diego, CA 92110, USA.

Charles Hauser (C)

Biology, St. Edward's University, Austin, TX 78704, USA.

Shan Hays (S)

Biology, Western Colorado University, Gunnison, CO 81231, USA.

Carina E Howell (CE)

Biological Sciences, Lock Haven University, Lock Haven, PA 17745, USA.

Jennifer Jemc (J)

Biology, Loyola University Chicago, Chicago, IL 60660, USA.

M Logan Johnson (ML)

Biology, Notre Dame College, South Euclid, OH 44121, USA.

Christopher J Jones (CJ)

Biological Sciences, Moravian College, Bethlehem, PA 18018, USA.

Lisa Kadlec (L)

Biology, Wilkes University, Wilkes-Barre, PA 18766, USA.

Jacob D Kagey (JD)

Biology, University of Detroit Mercy, Detroit, MI 48221, USA.

Kimberly L Keller (KL)

Biology, William Woods University, Fulton, MO 65251, USA.

Jennifer Kennell (J)

Biology, Vassar College, Poughkeepsie, NY 12604, USA.

S Catherine Silver Key (SCS)

Biological and Biomedical Sciences, North Carolina Central University, Durham, NC 27707, USA.

Adam J Kleinschmit (AJ)

Natural and Applied Science, University of Dubuque, Dubuque, IA 52001, USA.

Melissa Kleinschmit (M)

Natural and Applied Science, University of Dubuque, Dubuque, IA 52001, USA.

Nighat P Kokan (NP)

Natural Sciences, Cardinal Stritch University, Milwaukee, WI 53217, USA.

Olga Ruiz Kopp (OR)

Biology, Utah Valley University, Orem, UT 84058, USA.

Meg M Laakso (MM)

Biology, Eastern University, St. Davids, PA 19087, USA.

Judith Leatherman (J)

Biological Sciences, University of Northern Colorado, Greeley, CO 80639, USA.

Lindsey J Long (LJ)

Biology, Oklahoma Christian University, Oklahoma City, OK 73136, USA.

Mollie Manier (M)

Biological Sciences, George Washington University, Washington, DC 20052, USA.

Juan C Martinez-Cruzado (JC)

Biología, University of Puerto Rico at Mayagüez, Mayagüez, PR 00680, USA.

Luis F Matos (LF)

Biology, Eastern Washington University, Cheney, WA 99004, USA.

Amie Jo McClellan (AJ)

Science and Mathematics, Bennington College, Bennington, VT 05201, USA.

Gerard McNeil (G)

Biology, York College / CUNY, Jamaica, NY 11451, USA.

Evan Merkhofer (E)

Natural Sciences, Mount Saint Mary College, Newbergh, NY 12550, USA.

Vida Mingo (V)

Biology, Columbia College, Columbia, SC 29203, USA.

Hemlata Mistry (H)

Biology and Biochemistry, Widener University, Chester, PA 19013, USA.

Elizabeth Mitchell (E)

Biology, McLennan Community College, Waco, TX 76708, USA.

Nathan T Mortimer (NT)

Biological Sciences, Illinois State University, Normal, IL 61790, USA.

Debaditya Mukhopadhyay (D)

Molecular Biology, Biochemistry, and Bioinformatics, Towson University, Towson, MD 21252, USA.

Jennifer Leigh Myka (JL)

Biology, Gateway Community and Technical College, Florence, KY 41042, USA.

Alexis Nagengast (A)

Chemistry and Biochemistry, Widener University, Chester, PA 19013, USA.

Paul Overvoorde (P)

Biology, Macalester College, St. Paul, MN 55105, USA.

Don Paetkau (D)

Biology, Saint Mary's College, Notre Dame, IN 46556, USA.

Leocadia Paliulis (L)

Biology, Bucknell University, Lewisburg, PA 17837, USA.

Susan Parrish (S)

Biology, McDaniel College, Westminster, MD 21157, USA.

Mary Lai Preuss (ML)

Biological Sciences, Webster University, St. Louis, MO 63119, USA.

James V Price (JV)

Biology, Utah Valley University, Orem, UT 84058, USA.

Nicholas A Pullen (NA)

Biological Sciences, University of Northern Colorado, Greeley, CO 80639, USA.

Catherine Reinke (C)

Biology, Linfield College, McMinnville, OR 97128, USA.

Dennis Revie (D)

Biology, California Lutheran University, Thousand Oaks, CA 91360, USA.

Srebrenka Robic (S)

Biology, Agnes Scott College, Decatur, GA 30030, USA.

Jennifer A Roecklein-Canfield (JA)

Chemistry, Simmons College, Boston, MA 02115, USA.

Michael R Rubin (MR)

Biology, University of Puerto Rico at Cayey, Cayey, PR 00736, USA.

Takrima Sadikot (T)

Biology, Washburn University, Topeka, KS 66621, USA.

Jamie Siders Sanford (JS)

Biology, Ohio Northern University, Ada, OH 45810, USA.

Maria Santisteban (M)

Biology, University of North Carolina at Pembroke, Pembroke, NC 28372, USA.

Kenneth Saville (K)

Biology, Albion College, Albion, MI 49224, USA.

Stephanie Schroeder (S)

Biological Sciences, Webster University, St. Louis, MO 63119, USA.

Christopher D Shaffer (CD)

Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Karim A Sharif (KA)

Biology, Massasoit Community College, Brockton, MA 02302, USA.

Diane E Sklensky (DE)

Biology, Lane College, Jackson, TN 38301, USA.

Chiyedza Small (C)

Biology, Medgar Evers College, CUNY, Brooklyn, NY 11225, USA.

Mary Smith (M)

Biology, North Carolina A & T State University, Greensboro, NC 27411, USA.

Sheryl Smith (S)

Biology, Arcadia, University, Glenside, PA 19038, USA.

Rebecca Spokony (R)

Natural Sciences, Baruch College, CUNY, New York, NY 10010, USA.

Aparna Sreenivasan (A)

Biology, School of Natural Sciences, California State University, Monterey Bay, Seaside, CA 93950, USA.

Joyce Stamm (J)

Biology, University of Evansville, Evansville, IN 47722, USA.

Rachel Sterne-Marr (R)

Biology, Siena College, Loudonville, NY 12211, USA.

Katherine C Teeter (KC)

Biology, Northern Michigan University, Marquette, MI 49855, USA.

Justin Thackeray (J)

Biology, Clark University, Worcester, MA 01610, USA.

Jeffrey S Thompson (JS)

Biology, Denison University, Granville, OH 43023, USA.

Stephanie Toering Peters (ST)

Biology, Wartburg College, Waverly, IA 50677, USA.

Melanie Van Stry (M)

Biology, Lane College, Jackson, TN 38301, USA.

Norma Velazquez-Ulloa (N)

Biology, Lewis & Clark College, Portland, OR 97219, USA.

Cindy Wolfe (C)

Biology, Kentucky Wesleyan College, Owensboro, KY 42301, USA.

James Youngblom (J)

Biological Sciences, California State University Stanislaus, Turlock, CA 95382, USA.

Brian Yowler (B)

Biology, Grove City College, Grove City, PA 16127, USA.

Leming Zhou (L)

Health Information Management, University of Pittsburgh, Pittsburgh, PA 15213, USA.

Janie Brennan (J)

Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.

Jeremy Buhler (J)

Computer Science and Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.

Wilson Leung (W)

Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Laura K Reed (LK)

Biological Sciences, University of Alabama Tuscaloosa, AL 35487, USA.

Sarah C R Elgin (SCR)

Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Classifications MeSH