Sequence-Based Characterization of Intratumoral Bacteria-A Guide to Best Practice.
FFPE
cancer
low biomass
microbiome
sequence analysis
Journal
Frontiers in oncology
ISSN: 2234-943X
Titre abrégé: Front Oncol
Pays: Switzerland
ID NLM: 101568867
Informations de publication
Date de publication:
2020
2020
Historique:
received:
07
08
2019
accepted:
03
02
2020
entrez:
11
3
2020
pubmed:
11
3
2020
medline:
11
3
2020
Statut:
epublish
Résumé
Tumors are hospitable environments to bacteria and several recent studies on cancer patient samples have introduced the concept of an endogenous tumor microbiome. For a variety of reasons, this putative tumor microbiome is particularly challenging to investigate, and a failure to account for the various potential pitfalls will result in erroneous results and claims. Before this potentially extremely medically-significant habitat can be accurately characterized, a clear understanding of all potential confounding factors is required, and a best-practice approach should be developed and adopted. This review summarizes all of the potential issues confounding accurate bacterial DNA sequence analysis of the putative tumor microbiome, and offers solutions based on related research with the hope of assisting in the progression of research in this field.
Identifiants
pubmed: 32154174
doi: 10.3389/fonc.2020.00179
pmc: PMC7046755
doi:
Types de publication
Journal Article
Review
Langues
eng
Pagination
179Informations de copyright
Copyright © 2020 Walker, Tangney and Claesson.
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