Temporal Pattern Detection to Predict Adverse Events in Critical Care: Case Study With Acute Kidney Injury.

acute kidney injury adverse effects automated pattern recognition supervised machine learning

Journal

JMIR medical informatics
ISSN: 2291-9694
Titre abrégé: JMIR Med Inform
Pays: Canada
ID NLM: 101645109

Informations de publication

Date de publication:
17 Mar 2020
Historique:
received: 04 04 2019
accepted: 22 01 2020
revised: 23 11 2019
entrez: 18 3 2020
pubmed: 18 3 2020
medline: 18 3 2020
Statut: epublish

Résumé

More than 20% of patients admitted to the intensive care unit (ICU) develop an adverse event (AE). No previous study has leveraged patients' data to extract the temporal features using their structural temporal patterns, that is, trends. This study aimed to improve AE prediction methods by using structural temporal pattern detection that captures global and local temporal trends and to demonstrate these improvements in the detection of acute kidney injury (AKI). Using the Medical Information Mart for Intensive Care dataset, containing 22,542 patients, we extracted both global and local trends using structural pattern detection methods to predict AKI (ie, binary prediction). Classifiers were built on 17 input features consisting of vital signs and laboratory test results using state-of-the-art models; the optimal classifier was selected for comparisons with previous approaches. The classifier with structural pattern detection features was compared with two baseline classifiers that used different temporal feature extraction approaches commonly used in the literature: (1) symbolic temporal pattern detection, which is the most common approach for multivariate time series classification; and (2) the last recorded value before the prediction point, which is the most common approach to extract temporal data in the AKI prediction literature. Moreover, we assessed the individual contribution of global and local trends. Classifier performance was measured in terms of accuracy (primary outcome), area under the curve, and F-measure. For all experiments, we employed 20-fold cross-validation. Random forest was the best classifier using structural temporal pattern detection. The accuracy of the classifier with local and global trend features was significantly higher than that while using symbolic temporal pattern detection and the last recorded value (81.3% vs 70.6% vs 58.1%; P<.001). Excluding local or global features reduced the accuracy to 74.4% or 78.1%, respectively (P<.001). Classifiers using features obtained from structural temporal pattern detection significantly improved the prediction of AKI onset in ICU patients over two baselines based on common previous approaches. The proposed method is a generalizable approach to predict AEs in critical care that may be used to help clinicians intervene in a timely manner to prevent or mitigate AEs.

Sections du résumé

BACKGROUND BACKGROUND
More than 20% of patients admitted to the intensive care unit (ICU) develop an adverse event (AE). No previous study has leveraged patients' data to extract the temporal features using their structural temporal patterns, that is, trends.
OBJECTIVE OBJECTIVE
This study aimed to improve AE prediction methods by using structural temporal pattern detection that captures global and local temporal trends and to demonstrate these improvements in the detection of acute kidney injury (AKI).
METHODS METHODS
Using the Medical Information Mart for Intensive Care dataset, containing 22,542 patients, we extracted both global and local trends using structural pattern detection methods to predict AKI (ie, binary prediction). Classifiers were built on 17 input features consisting of vital signs and laboratory test results using state-of-the-art models; the optimal classifier was selected for comparisons with previous approaches. The classifier with structural pattern detection features was compared with two baseline classifiers that used different temporal feature extraction approaches commonly used in the literature: (1) symbolic temporal pattern detection, which is the most common approach for multivariate time series classification; and (2) the last recorded value before the prediction point, which is the most common approach to extract temporal data in the AKI prediction literature. Moreover, we assessed the individual contribution of global and local trends. Classifier performance was measured in terms of accuracy (primary outcome), area under the curve, and F-measure. For all experiments, we employed 20-fold cross-validation.
RESULTS RESULTS
Random forest was the best classifier using structural temporal pattern detection. The accuracy of the classifier with local and global trend features was significantly higher than that while using symbolic temporal pattern detection and the last recorded value (81.3% vs 70.6% vs 58.1%; P<.001). Excluding local or global features reduced the accuracy to 74.4% or 78.1%, respectively (P<.001).
CONCLUSIONS CONCLUSIONS
Classifiers using features obtained from structural temporal pattern detection significantly improved the prediction of AKI onset in ICU patients over two baselines based on common previous approaches. The proposed method is a generalizable approach to predict AEs in critical care that may be used to help clinicians intervene in a timely manner to prevent or mitigate AEs.

Identifiants

pubmed: 32181753
pii: v8i3e14272
doi: 10.2196/14272
pmc: PMC7109618
doi:

Types de publication

Journal Article

Langues

eng

Pagination

e14272

Subventions

Organisme : NCATS NIH HHS
ID : UL1 TR002538
Pays : United States

Informations de copyright

©Mohammad Amin Morid, Olivia R Liu Sheng, Guilherme Del Fiol, Julio C Facelli, Bruce E Bray, Samir Abdelrahman. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 17.03.2020.

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Auteurs

Mohammad Amin Morid (MA)

Department of Information Systems and Analytics, Leavey School of Business, Santa Clara University, Santa Clara, CA, United States.

Olivia R Liu Sheng (ORL)

Department of Operations and Information Systems, David Eccles School of Business, University of Utah, Salt Lake City, UT, United States.

Guilherme Del Fiol (G)

Department of Biomedical Informatics, School of Medicine, University of Utah, Salt Lake City, UT, United States.

Julio C Facelli (JC)

Department of Biomedical Informatics, School of Medicine, University of Utah, Salt Lake City, UT, United States.
Center for Clinical and Translational Science, University of Utah, Salt Lake City, UT, United States.

Bruce E Bray (BE)

Department of Biomedical Informatics, School of Medicine, University of Utah, Salt Lake City, UT, United States.
Division of Cardiovascular Medicine, School of Medicine, University of Utah, Salt Lake City, UT, United States.

Samir Abdelrahman (S)

Department of Biomedical Informatics, School of Medicine, University of Utah, Salt Lake City, UT, United States.
Computer Science Department, Faculty of Computers and Information, Cairo University, Cairo, Egypt.

Classifications MeSH