In silico analysis of the structural diversity and interactions between invertases and invertase inhibitors from potato (
In silico
Invertase
Invertase inhibitor
Phylogenetic
Solanum tuberosum
Journal
3 Biotech
ISSN: 2190-572X
Titre abrégé: 3 Biotech
Pays: Germany
ID NLM: 101565857
Informations de publication
Date de publication:
Apr 2020
Apr 2020
Historique:
received:
27
04
2019
accepted:
17
03
2020
entrez:
1
4
2020
pubmed:
1
4
2020
medline:
1
4
2020
Statut:
ppublish
Résumé
We performed sequence diversity, phylogenetic profiling, 3D structure modelling and in silico interactions between invertases (cell wall/apoplastic and vacuolar) and invertase inhibitors (cell wall/apoplastic and vacuolar) from potato. Cloning and sequencing of invertase inhibitors was performed from different potato cultivars. The comparison of the protein sequences of the different isoforms of invertases and invertase inhibitors exhibited insertions and deletions as well as the variation in terms of amino acid residues. Furthermore, the phylogenetic tree analysis displayed two groups of invertase inhibitors corresponding to the cell wall/apoplast and vacuole. Using Phyre
Identifiants
pubmed: 32226707
doi: 10.1007/s13205-020-02171-y
pii: 2171
pmc: PMC7096596
doi:
Types de publication
Journal Article
Langues
eng
Pagination
178Informations de copyright
© King Abdulaziz City for Science and Technology 2020.
Déclaration de conflit d'intérêts
Conflict of interestAuthors declare that they have no conflict of interest.
Références
Plant Cell. 2009 Jul;21(7):2072-89
pubmed: 19574437
Methods Mol Biol. 2000;132:365-86
pubmed: 10547847
Trends Plant Sci. 2004 Dec;9(12):606-13
pubmed: 15564128
Plant Cell. 2004 May;16(5):1276-87
pubmed: 15100396
Mol Genet Genomics. 2012 Jun;287(6):451-60
pubmed: 22526372
FEBS Lett. 1996 May 6;385(3):171-5
pubmed: 8647244
Mol Plant Pathol. 2011 Apr;12(3):247-62
pubmed: 21355997
PLoS One. 2012;7(1):e28896
pubmed: 22303436
EMBO J. 1986 Apr;5(4):823-6
pubmed: 3709526
BMC Plant Biol. 2010 Dec 09;10:271
pubmed: 21143910
Plant Physiol Biochem. 2013 Dec;73:237-44
pubmed: 24161651
Mol Genet Genomics. 2010 Sep;284(3):147-59
pubmed: 20617340
Theor Appl Genet. 2008 May;116(8):1167-81
pubmed: 18379755
J Mol Biol. 2004 Jan 23;335(4):987-95
pubmed: 14698293
J Mol Biol. 2008 Mar 21;377(2):378-85
pubmed: 18258263
Nature. 2011 Jul 10;475(7355):189-95
pubmed: 21743474
Genetics. 2002 Nov;162(3):1423-34
pubmed: 12454085
Nucleic Acids Res. 1994 Nov 11;22(22):4673-80
pubmed: 7984417
Biochimie. 2008 Nov-Dec;90(11-12):1611-23
pubmed: 18573306
J Protein Chem. 2003 May;22(4):363-9
pubmed: 13678300
Biochim Biophys Acta. 2004 Feb 12;1696(2):253-61
pubmed: 14871666
J Biol Chem. 2004 Apr 30;279(18):18903-10
pubmed: 14973124
J Mol Biol. 1963 Jul;7:95-9
pubmed: 13990617
Proc Natl Acad Sci U S A. 2010 Oct 5;107(40):17427-32
pubmed: 20858733
Nat Biotechnol. 1999 Jul;17(7):708-11
pubmed: 10404166
Acta Crystallogr D Biol Crystallogr. 2003 Dec;59(Pt 12):2279-82
pubmed: 14646094
Mol Biol Evol. 2011 Oct;28(10):2731-9
pubmed: 21546353
J Exp Bot. 2011 Jun;62(10):3519-34
pubmed: 21393382
J Mol Biol. 2007 Sep 21;372(3):774-97
pubmed: 17681537
Food Chem. 2019 Oct 15;295:403-411
pubmed: 31174775
FEBS Lett. 2004 Aug 27;573(1-3):105-9
pubmed: 15327983
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W510-4
pubmed: 19429685
Plant Cell. 2004 Dec;16(12):3437-47
pubmed: 15528298
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W407-10
pubmed: 17517781
Plant Physiol. 1998 Feb;116(2):733-42
pubmed: 9489020
Trends Plant Sci. 2003 Jul;8(7):310-2
pubmed: 12878011
J Mol Biol. 1990 Oct 5;215(3):403-10
pubmed: 2231712
Gene. 2000 Mar 7;245(1):89-102
pubmed: 10713449