Recovery, Assessment, and Molecular Characterization of Minor Olive Genotypes in Tunisia.

SSR Tunisia molecular polymorphism olive germplasm

Journal

Plants (Basel, Switzerland)
ISSN: 2223-7747
Titre abrégé: Plants (Basel)
Pays: Switzerland
ID NLM: 101596181

Informations de publication

Date de publication:
20 Mar 2020
Historique:
received: 11 02 2020
revised: 16 03 2020
accepted: 17 03 2020
entrez: 5 4 2020
pubmed: 5 4 2020
medline: 5 4 2020
Statut: epublish

Résumé

Olive is one of the oldest cultivated species in the Mediterranean Basin, including Tunisia, where it has a wide diversity, with more than 200 cultivars, of both wild and feral forms. Many minor cultivars are still present in marginal areas of Tunisia, where they are maintained by farmers in small local groves, but they are poorly characterized and evaluated. In order to recover this neglected germplasm, surveys were conducted in different areas, and 31 genotypes were collected, molecularly characterized with 12 nuclear microsatellite (simple sequence repeat (SSR)) markers, and compared with 26 reference cultivars present in the Tunisian National Olive collection. The analysis revealed an overall high genetic diversity of this olive's germplasm, but also discovered the presence of synonymies and homonymies among the commercialized varieties. The structure analysis showed the presence of different gene pools in the analyzed germplasm. In particular, the marginal germplasm from Ras Jbal and Azmour is characterized by gene pools not present in commercial (Nurseries) varieties, pointing out the very narrow genetic base of the commercialized olive material in Tunisia, and the need to broaden it to avoid the risk of genetic erosion of this species in this country.

Identifiants

pubmed: 32244853
pii: plants9030382
doi: 10.3390/plants9030382
pmc: PMC7154912
pii:
doi:

Types de publication

Journal Article

Langues

eng

Commentaires et corrections

Type : ErratumIn

Références

PeerJ. 2018 Jul 11;6:e5260
pubmed: 30018865
Theor Appl Genet. 2002 Feb;104(2-3):223-228
pubmed: 12582690
Physiol Mol Biol Plants. 2017 Jan;23(1):197-205
pubmed: 28250595
Mol Ecol. 2001 Jan;10(1):249-56
pubmed: 11251803
Ann Bot. 2013 Nov;112(7):1293-302
pubmed: 24013386
Database (Oxford). 2016 Jan 30;2016:
pubmed: 26827236
Genetics. 1999 Aug;152(4):1753-66
pubmed: 10430599
Mol Ecol. 2007 Mar;16(5):1099-106
pubmed: 17305863
Plant Sci. 2016 Jan;242:3-13
pubmed: 26566820
ScientificWorldJournal. 2014 Feb 27;2014:296590
pubmed: 24723801
Food Chem. 2017 Mar 15;219:131-138
pubmed: 27765209
J Agric Food Chem. 2016 Jul 27;64(29):5824-36
pubmed: 27357913
Bioinformatics. 2012 Oct 1;28(19):2537-9
pubmed: 22820204
J Genet. 2014 Dec 19;93(3):e148-54
pubmed: 25572072
Am J Hum Genet. 1980 May;32(3):314-31
pubmed: 6247908
Genes (Basel). 2020 Feb 24;11(2):
pubmed: 32102450
Mol Ecol. 2005 Jul;14(8):2611-20
pubmed: 15969739
Nat Rev Genet. 2009 Sep;10(9):639-50
pubmed: 19687804
Theor Appl Genet. 2002 Feb;104(2-3):301-307
pubmed: 12582701
Sci Rep. 2018 Oct 26;8(1):15877
pubmed: 30367101
Ann Eugen. 1951 Mar;15(4):323-54
pubmed: 24540312
Evolution. 1985 Jul;39(4):783-791
pubmed: 28561359
Mol Ecol. 2000 Aug;9(8):1171-3
pubmed: 10964237
Genetics. 2000 Jun;155(2):945-59
pubmed: 10835412
Front Plant Sci. 2018 Sep 21;9:1320
pubmed: 30298075
Plants (Basel). 2019 Aug 05;8(8):
pubmed: 31387331
Ann Bot. 2011 Oct;108(5):797-807
pubmed: 21852276

Auteurs

Olfa Saddoud Debbabi (O)

Banque Nationale de Gènes, Boulevard du Leader Yesser Arafet, Charguia 1, 1080 Tunis, Tunisie.
Olive Tree Institute, Station régionale de Tunis, Avenue de l'Indépendance, 2049 Ariana, BP 208 Cité Mahrajène, 2049 Tunis, Tunisie.

Monica Marilena Miazzi (MM)

Department of Soil, Plant and Food Sciences (DISPA), University of Bari, Via Amendola 165/A, 70126 Bari, Italy.

Olfa Elloumi (O)

Olive Tree Institut Route de l'Aéroport, km 1,5 - BP 1087, 3000 Sfax, Tunisie.

Mahdi Fendri Fendri (MF)

Olive Tree Institute, Station régionale de Tunis, Avenue de l'Indépendance, 2049 Ariana, BP 208 Cité Mahrajène, 2049 Tunis, Tunisie.

Fathi Ben Amar (F)

Olive Tree Institut Route de l'Aéroport, km 1,5 - BP 1087, 3000 Sfax, Tunisie.

Michele Savoia (M)

Department of Soil, Plant and Food Sciences (DISPA), University of Bari, Via Amendola 165/A, 70126 Bari, Italy.

Sara Sion (S)

Department of Soil, Plant and Food Sciences (DISPA), University of Bari, Via Amendola 165/A, 70126 Bari, Italy.

Hana Souabni (H)

Olive Tree Institut Route de l'Aéroport, km 1,5 - BP 1087, 3000 Sfax, Tunisie.

Sameh Rahmani Mnasri (SR)

Banque Nationale de Gènes, Boulevard du Leader Yesser Arafet, Charguia 1, 1080 Tunis, Tunisie.

Selma Ben Abdelaali (S)

Banque Nationale de Gènes, Boulevard du Leader Yesser Arafet, Charguia 1, 1080 Tunis, Tunisie.

Fadwa Jendoubi (F)

Olive Tree Institut Route de l'Aéroport, km 1,5 - BP 1087, 3000 Sfax, Tunisie.

Giacomo Mangini (G)

Department of Soil, Plant and Food Sciences (DISPA), University of Bari, Via Amendola 165/A, 70126 Bari, Italy.

Franco Famiani (F)

Department of Agricultural, Food and Environmental Sciences, University of Perugia, 06123 Perugia, Italy.

Francesca Taranto (F)

CNR-IBBR Institute of Bioscience and BioResources, Via Universita' 133, 80055 Portici, Naples, Italy.

Cinzia Montemurro (C)

Department of Soil, Plant and Food Sciences (DISPA), University of Bari, Via Amendola 165/A, 70126 Bari, Italy.
National Research Council of Italy (CNR), Institute for Sustainable Plant Protection - Support Unit Bari, Via Amendola 122/D, 70126 Bari, Italy.

Monji Msallem (M)

Olive Tree Institute, Station régionale de Tunis, Avenue de l'Indépendance, 2049 Ariana, BP 208 Cité Mahrajène, 2049 Tunis, Tunisie.

Classifications MeSH