Deep Learning-Based Concurrent Brain Registration and Tumor Segmentation.

brain tumor segmentation convolutional neural networks deep learning deformable registration multi-task networks

Journal

Frontiers in computational neuroscience
ISSN: 1662-5188
Titre abrégé: Front Comput Neurosci
Pays: Switzerland
ID NLM: 101477956

Informations de publication

Date de publication:
2020
Historique:
received: 03 07 2019
accepted: 11 02 2020
entrez: 9 4 2020
pubmed: 9 4 2020
medline: 9 4 2020
Statut: epublish

Résumé

Image registration and segmentation are the two most studied problems in medical image analysis. Deep learning algorithms have recently gained a lot of attention due to their success and state-of-the-art results in variety of problems and communities. In this paper, we propose a novel, efficient, and multi-task algorithm that addresses the problems of image registration and brain tumor segmentation jointly. Our method exploits the dependencies between these tasks through a natural coupling of their interdependencies during inference. In particular, the similarity constraints are relaxed within the tumor regions using an efficient and relatively simple formulation. We evaluated the performance of our formulation both quantitatively and qualitatively for registration and segmentation problems on two publicly available datasets (BraTS 2018 and OASIS 3), reporting competitive results with other recent state-of-the-art methods. Moreover, our proposed framework reports significant amelioration (

Identifiants

pubmed: 32265680
doi: 10.3389/fncom.2020.00017
pmc: PMC7100603
doi:

Types de publication

Journal Article

Langues

eng

Pagination

17

Subventions

Organisme : NIA NIH HHS
ID : P01 AG003991
Pays : United States
Organisme : NIA NIH HHS
ID : P01 AG026276
Pays : United States

Informations de copyright

Copyright © 2020 Estienne, Lerousseau, Vakalopoulou, Alvarez Andres, Battistella, Carré, Chandra, Christodoulidis, Sahasrabudhe, Sun, Robert, Talbot, Paragios and Deutsch.

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Auteurs

Théo Estienne (T)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.
Université Paris-Saclay, CentraleSupélec, Mathématiques et Informatique pour la Complexité et les Systèmes, Gif-sur-Yvette, France.

Marvin Lerousseau (M)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.
Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Maria Vakalopoulou (M)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, CentraleSupélec, Mathématiques et Informatique pour la Complexité et les Systèmes, Gif-sur-Yvette, France.
Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Emilie Alvarez Andres (E)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.

Enzo Battistella (E)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.
Université Paris-Saclay, CentraleSupélec, Mathématiques et Informatique pour la Complexité et les Systèmes, Gif-sur-Yvette, France.

Alexandre Carré (A)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.

Siddhartha Chandra (S)

Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Stergios Christodoulidis (S)

Université Paris-Saclay, Institut Gustave Roussy, Inserm, Predictive Biomarkers and Novel Therapeutic Strategies in Oncology, Villejuif, France.

Mihir Sahasrabudhe (M)

Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Roger Sun (R)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.
Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Charlotte Robert (C)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.

Hugues Talbot (H)

Université Paris-Saclay, CentraleSupélec, Inria, Centre de Vision Numérique, Gif-sur-Yvette, France.

Nikos Paragios (N)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.

Eric Deutsch (E)

Gustave Roussy-CentraleSupélec-TheraPanacea Center of Artificial Intelligence in Radiation Therapy and Oncology, Gustave Roussy Cancer Campus, Villejuif, France.
Université Paris-Saclay, Institut Gustave Roussy, Inserm, Molecular Radiotherapy and Innovative Therapeutics, Villejuif, France.
Gustave Roussy Cancer Campus, Department of Radiation Oncology, Villejuif, France.

Classifications MeSH