Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake.

benchmark call for participation functional-structural root architecture models model comparison root water uptake

Journal

Frontiers in plant science
ISSN: 1664-462X
Titre abrégé: Front Plant Sci
Pays: Switzerland
ID NLM: 101568200

Informations de publication

Date de publication:
2020
Historique:
received: 23 10 2019
accepted: 03 03 2020
entrez: 17 4 2020
pubmed: 17 4 2020
medline: 17 4 2020
Statut: epublish

Résumé

Three-dimensional models of root growth, architecture and function are becoming important tools that aid the design of agricultural management schemes and the selection of beneficial root traits. However, while benchmarking is common in many disciplines that use numerical models, such as natural and engineering sciences, functional-structural root architecture models have never been systematically compared. The following reasons might induce disagreement between the simulation results of different models: different representation of root growth, sink term of root water and solute uptake and representation of the rhizosphere. Presently, the extent of discrepancies is unknown, and a framework for quantitatively comparing functional-structural root architecture models is required. We propose, in a first step, to define benchmarking scenarios that test individual components of complex models: root architecture, water flow in soil and water flow in roots. While the latter two will focus mainly on comparing numerical aspects, the root architectural models have to be compared at a conceptual level as they generally differ in process representation. Therefore, defining common inputs that allow recreating reference root systems in all models will be a key challenge. In a second step, benchmarking scenarios for the coupled problems are defined. We expect that the results of step 1 will enable us to better interpret differences found in step 2. This benchmarking will result in a better understanding of the different models and contribute toward improving them. Improved models will allow us to simulate various scenarios with greater confidence and avoid bugs, numerical errors or conceptual misunderstandings. This work will set a standard for future model development.

Identifiants

pubmed: 32296451
doi: 10.3389/fpls.2020.00316
pmc: PMC7136536
doi:

Types de publication

Journal Article

Langues

eng

Pagination

316

Informations de copyright

Copyright © 2020 Schnepf, Black, Couvreur, Delory, Doussan, Koch, Koch, Javaux, Landl, Leitner, Lobet, Mai, Meunier, Petrich, Postma, Priesack, Schmidt, Vanderborght, Vereecken and Weber.

Références

Am J Bot. 2017 Mar;104(3):349-353
pubmed: 28341629
New Phytol. 2017 Aug;215(3):1274-1286
pubmed: 28653341
Plant Physiol. 2018 Dec;178(4):1689-1703
pubmed: 30366980
Front Plant Sci. 2019 Oct 29;10:1358
pubmed: 31736998
J Exp Bot. 2019 Apr 29;70(9):2345-2357
pubmed: 30329081
Plant Cell Environ. 2018 Jan;41(1):121-133
pubmed: 28503782
Ann Bot. 2016 Oct 1;118(4):853-864
pubmed: 27539602
Plant Physiol. 2011 Sep;157(1):29-39
pubmed: 21771915
Plant Physiol. 2015 Mar;167(3):617-27
pubmed: 25614065
Ann Bot. 2018 Apr 18;121(5):1033-1053
pubmed: 29432520
Plant Physiol. 2018 Aug;177(4):1382-1395
pubmed: 29871979
F1000Res. 2018 Jan 8;7:22
pubmed: 29636899
Am J Bot. 2007 Sep;94(9):1506-14
pubmed: 21636517
Physiol Plant. 2018 May;163(1):59-72
pubmed: 29057474
J Theor Biol. 2004 May 21;228(2):155-71
pubmed: 15094012

Auteurs

Andrea Schnepf (A)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
International Soil Modelling Consortium ISMC, Jülich, Germany.

Christopher K Black (CK)

Department of Plant Science, The Pennsylvania State University, University Park, PA, United States.

Valentin Couvreur (V)

Earth and Life Institute, Agronomy, Université Catholique de Louvain, Louvain-la-Neuve, Belgium.

Benjamin M Delory (BM)

Institute of Ecology, Leuphana University Lüneburg, Lüneburg, Germany.

Claude Doussan (C)

INRAE, Avignon Université, EMMAH, Avignon, France.

Axelle Koch (A)

Earth and Life Institute, Environmental Sciences, Université Catholique de Louvain, Louvain-la-Neuve, Belgium.

Timo Koch (T)

Department of Hydromechanics and Modelling of Hydrosystems, University of Stuttgart, Stuttgart, Germany.

Mathieu Javaux (M)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
Earth and Life Institute, Agronomy, Université Catholique de Louvain, Louvain-la-Neuve, Belgium.

Magdalena Landl (M)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
International Soil Modelling Consortium ISMC, Jülich, Germany.

Daniel Leitner (D)

Simulationswerkstatt, Leonding, Austria.

Guillaume Lobet (G)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
International Soil Modelling Consortium ISMC, Jülich, Germany.

Trung Hieu Mai (TH)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.

Félicien Meunier (F)

CAVElab-Computational and Applied Vegetation Ecology, Ghent University, Ghent, Belgium.
Department of Earth and Environment, Boston University, Boston, MA, United States.

Lukas Petrich (L)

Institute of Stochastics, Ulm University, Ulm, Germany.

Johannes A Postma (JA)

Institut für Bio- und Geowissenschaften: Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany.

Eckart Priesack (E)

Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Neuherberg, Germany.

Volker Schmidt (V)

Institute of Stochastics, Ulm University, Ulm, Germany.

Jan Vanderborght (J)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
International Soil Modelling Consortium ISMC, Jülich, Germany.

Harry Vereecken (H)

Institut für Bio- und Geowissenschaften: Agrosphäre (IBG-3), Forschungszentrum Jülich GmbH, Jülich, Germany.
International Soil Modelling Consortium ISMC, Jülich, Germany.

Matthias Weber (M)

Institute of Stochastics, Ulm University, Ulm, Germany.

Classifications MeSH