Quantitative spectral quality assessment technique validated using intraoperative in vivo Raman spectroscopy measurements.

Raman spectroscopy fluorescence machine learning signal processing surgery tissue optics

Journal

Journal of biomedical optics
ISSN: 1560-2281
Titre abrégé: J Biomed Opt
Pays: United States
ID NLM: 9605853

Informations de publication

Date de publication:
04 2020
Historique:
received: 17 01 2020
accepted: 08 04 2020
entrez: 23 4 2020
pubmed: 23 4 2020
medline: 25 9 2021
Statut: ppublish

Résumé

Ensuring spectral quality is prerequisite to Raman spectroscopy applied to surgery. This is because the inclusion of poor-quality spectra in the training phase of Raman-based pathology detection models can compromise prediction robustness and generalizability to new data. Currently, there exists no quantitative spectral quality assessment technique that can be used to either reject low-quality data points in existing Raman datasets based on spectral morphology or, perhaps more importantly, to optimize the in vivo data acquisition process to ensure minimal spectral quality standards are met. To develop a quantitative method evaluating Raman signal quality based on the variance associated with stochastic noise in important tissue bands, including C─C stretch, CH2  /  CH3 deformation, and the amide bands. A single-point hand-held Raman spectroscopy probe system was used to acquire 315 spectra from 44 brain cancer patients. All measurements were classified as either high or low quality based on visual assessment (qualitative) and using a quantitative quality factor (QF) metric. Receiver-operator-characteristic (ROC) analyses were performed to evaluate the performance of the quantitative metric to assess spectral quality and improve cancer detection accuracy. The method can separate high- and low-quality spectra with a sensitivity of 89% and a specificity of 90% which is shown to increase cancer detection sensitivity and specificity by up to 20% and 12%, respectively. The QF threshold is effective in stratifying spectra in terms of spectral quality and the observed false negatives and false positives can be linked to limitations of qualitative spectral quality assessment.

Identifiants

pubmed: 32319263
pii: JBO-200014LRR
doi: 10.1117/1.JBO.25.4.040501
pmc: PMC7171512
doi:

Types de publication

Letter Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

1-8

Subventions

Organisme : CIHR
Pays : Canada

Références

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Auteurs

Frédérick Dallaire (F)

Polytechnique Montréal, Department of Computer Engineering and Software Engineering, Montréal, Québe, Canada.
Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.

Fabien Picot (F)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Polytechnique Montréal, Department of Engineering Physics, Montréal, Québec, Canada.

Jean-Philippe Tremblay (JP)

Polytechnique Montréal, Department of Electrical Engineering Montréal, Québec, Canada.

Guillaume Sheehy (G)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Polytechnique Montréal, Department of Engineering Physics, Montréal, Québec, Canada.

Émile Lemoine (É)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Polytechnique Montréal, Department of Electrical Engineering Montréal, Québec, Canada.

Rajeev Agarwal (R)

ODS Medical Inc., Montréal, Québec, Canada.

Samuel Kadoury (S)

Polytechnique Montréal, Department of Computer Engineering and Software Engineering, Montréal, Québe, Canada.
Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.

Dominique Trudel (D)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Université de Montréal, Department of Pathology and Cellular Biology, Montréal, Québec, Canada.
Centre Hospitalier de l'Université de Montréal, Department of Pathology, Québec, Canada.

Frédéric Lesage (F)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Centre de Recherche de l'Institut de Cardiologie de Montréal, Montréal, Québec, Canada.

Kevin Petrecca (K)

McGill University, Montreal Neurological Institute and Hospital, Brain Tumour Research Center, Depar, Canada.

Frédéric Leblond (F)

Centre de Recherche du Centre Hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
Polytechnique Montréal, Department of Engineering Physics, Montréal, Québec, Canada.

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Classifications MeSH