Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth.

longitudinal analysis meta-analysis microbiome preterm birth public data analysis vaginal microbiome

Journal

Frontiers in microbiology
ISSN: 1664-302X
Titre abrégé: Front Microbiol
Pays: Switzerland
ID NLM: 101548977

Informations de publication

Date de publication:
2020
Historique:
received: 13 12 2019
accepted: 04 03 2020
entrez: 24 4 2020
pubmed: 24 4 2020
medline: 24 4 2020
Statut: epublish

Résumé

Preterm birth (PTB) is defined as the birth of an infant before 37 weeks of gestational age. It is the leading cause of perinatal morbidity and mortality worldwide. In this study, we present a comprehensive meta-analysis of vaginal microbiome in PTB. We integrated raw longitudinal 16S rRNA vaginal microbiome data from five independent studies across 3,201 samples and were able to gain new insights into the vaginal microbiome state in women who deliver preterm in comparison to those who deliver at term. We found that women who deliver prematurely show higher within-sample variance in vaginal microbiome abundance, with the most significant difference observed during the first trimester. Modeling the data longitudinally revealed a number of microbial genera as associated with PTB, including several that were previously known and two newly identified by this meta-analysis:

Identifiants

pubmed: 32322240
doi: 10.3389/fmicb.2020.00476
pmc: PMC7156768
doi:

Types de publication

Journal Article

Langues

eng

Pagination

476

Informations de copyright

Copyright © 2020 Kosti, Lyalina, Pollard, Butte and Sirota.

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Auteurs

Idit Kosti (I)

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, United States.
Department of Pediatrics, University of California, San Francisco, San Francisco, CA, United States.

Svetlana Lyalina (S)

Integrative Program in Quantitative Biology, Gladstone Institutes, University of California, San Francisco, San Francisco, CA, United States.

Katherine S Pollard (KS)

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, United States.
Department of Epidemiology & Biostatistics, Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, United States.
Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA, United States.
Chan Zuckerberg Biohub, San Francisco, CA, United States.

Atul J Butte (AJ)

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, United States.
Department of Pediatrics, University of California, San Francisco, San Francisco, CA, United States.

Marina Sirota (M)

Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, United States.
Department of Pediatrics, University of California, San Francisco, San Francisco, CA, United States.

Classifications MeSH