A Critical Evaluation of Vibrational Stark Effect (VSE) Probes with the Local Vibrational Mode Theory.

Stark spectroscopy VSE carbonyl electric field infrared spectroscopy local vibrational mode theory nitrile normal mode decomposition vibrational Stark effect vibrational Stark effect probes

Journal

Sensors (Basel, Switzerland)
ISSN: 1424-8220
Titre abrégé: Sensors (Basel)
Pays: Switzerland
ID NLM: 101204366

Informations de publication

Date de publication:
21 Apr 2020
Historique:
received: 20 03 2020
revised: 14 04 2020
accepted: 15 04 2020
entrez: 25 4 2020
pubmed: 25 4 2020
medline: 25 4 2020
Statut: epublish

Résumé

Over the past two decades, the vibrational Stark effect has become an important tool to measure and analyze the in situ electric field strength in various chemical environments with infrared spectroscopy. The underlying assumption of this effect is that the normal stretching mode of a target bond such as CO or CN of a reporter molecule (termed vibrational Stark effect probe) is localized and free from mass-coupling from other internal coordinates, so that its frequency shift directly reflects the influence of the vicinal electric field. However, the validity of this essential assumption has never been assessed. Given the fact that normal modes are generally delocalized because of mass-coupling, this analysis was overdue. Therefore, we carried out a comprehensive evaluation of 68 vibrational Stark effect probes and candidates to quantify the degree to which their target normal vibration of probe bond stretching is decoupled from local vibrations driven by other internal coordinates. The unique tool we used is the local mode analysis originally introduced by Konkoli and Cremer, in particular the decomposition of normal modes into local mode contributions. Based on our results, we recommend 31 polyatomic molecules with localized target bonds as ideal vibrational Stark effect probe candidates.

Identifiants

pubmed: 32326248
pii: s20082358
doi: 10.3390/s20082358
pmc: PMC7219233
pii:
doi:

Types de publication

Journal Article

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : National Science Foundation
ID : CHE 1464906

Références

Nucleic Acids Res. 2019 Jan 8;47(D1):D1102-D1109
pubmed: 30371825
J Chem Phys. 2012 Aug 28;137(8):084114
pubmed: 22938225
J Chem Theory Comput. 2019 Mar 12;15(3):1761-1776
pubmed: 30776228
Int J Mol Sci. 2012;13(6):7466-82
pubmed: 22837705
Annu Rev Phys Chem. 2018 Apr 20;69:253-271
pubmed: 29677466
Chem Rev. 2017 Feb 8;117(3):1927-1969
pubmed: 28106985
Biochim Biophys Acta Gen Subj. 2017 Nov;1861(11 Pt B):3053-3059
pubmed: 28229928
Chemistry. 2012 Sep 17;18(38):11904-8
pubmed: 22907797
Annu Rev Biochem. 2017 Jun 20;86:387-415
pubmed: 28375745
Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):8487-8492
pubmed: 28739954
J Phys Chem B. 2008 Oct 23;112(42):13188-92
pubmed: 18816094
Acc Chem Res. 2017 Apr 18;50(4):968-976
pubmed: 28345879
Acc Chem Res. 2015 Apr 21;48(4):998-1006
pubmed: 25799082
Biochemistry. 2003 Oct 21;42(41):12050-5
pubmed: 14556636
Phys Chem Chem Phys. 2008 Nov 28;10(44):6615-20
pubmed: 18989472
Inorg Chem. 2014 Jan 6;53(1):478-95
pubmed: 24320732
Biochemistry. 2008 Feb 12;47(6):1588-98
pubmed: 18205401
J Phys Chem B. 2016 May 19;120(19):4383-7
pubmed: 27111635
J Chem Phys. 2006 Nov 21;125(19):194101
pubmed: 17129083
Annu Rev Phys Chem. 2015 Apr;66:357-77
pubmed: 25580624
J Phys Chem Lett. 2017 Dec 21;8(24):6165-6170
pubmed: 29220191
Science. 2014 Dec 19;346(6216):1510-4
pubmed: 25525245
J Phys Chem B. 2004 May 20;108(20):6450-7
pubmed: 18950134
J Phys Chem B. 2016 May 5;120(17):4034-46
pubmed: 27090068
J Phys Chem B. 2015 Nov 5;119(44):13945-57
pubmed: 26375183
J Phys Chem B. 2019 Feb 21;123(7):1527-1536
pubmed: 30668130
Spectrochim Acta A Mol Biomol Spectrosc. 2013 Oct;114:220-30
pubmed: 23778167
Phys Chem Chem Phys. 2009 Oct 1;11(37):8119-32
pubmed: 19756266
J Phys Chem Lett. 2018 Jun 7;9(11):3074-3080
pubmed: 29782171
Chem Rev. 2019 Jun 12;119(11):6613-6630
pubmed: 30277066
J Phys Chem A. 2017 Mar 23;121(11):2265-2273
pubmed: 28182415
Angew Chem Int Ed Engl. 2017 Jan 19;56(4):1046-1049
pubmed: 27996190
J Phys Chem Lett. 2018 May 17;9(10):2560-2567
pubmed: 29697984
Annu Rev Phys Chem. 1997;48:213-42
pubmed: 9348658
J Am Chem Soc. 2016 Sep 14;138(36):11890-5
pubmed: 27545569
J Phys Chem B. 2013 Dec 19;117(50):16236-48
pubmed: 24304155
J Phys Chem B. 2016 Sep 15;120(36):9672-84
pubmed: 27541577
J Am Chem Soc. 2013 Jul 31;135(30):11181-92
pubmed: 23808481
Phys Chem Chem Phys. 2005 Sep 21;7(18):3297-305
pubmed: 16240044
J Phys Chem B. 2009 Mar 12;113(10):2972-83
pubmed: 19708160
Biophys J. 2005 Mar;88(3):1978-90
pubmed: 15596507
J Chem Theory Comput. 2018 May 8;14(5):2558-2569
pubmed: 29634270
Dalton Trans. 2017 Jul 4;46(26):8323-8338
pubmed: 28350024
J Phys Chem B. 2018 Sep 6;122(35):8330-8342
pubmed: 30109934
J Phys Chem B. 2007 Oct 11;111(40):11611-3
pubmed: 17877390
Phys Chem Chem Phys. 2014 Oct 7;16(37):20047-60
pubmed: 25127074
Inorg Chem. 2016 Mar 7;55(5):2332-44
pubmed: 26900632

Auteurs

Niraj Verma (N)

Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, USA.

Yunwen Tao (Y)

Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, USA.

Wenli Zou (W)

Institute of Modern Physics, Northwest University, Xi'an 710127, China.

Xia Chen (X)

Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.

Xin Chen (X)

Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China.

Marek Freindorf (M)

Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, USA.

Elfi Kraka (E)

Department of Chemistry, Southern Methodist University, 3215 Daniel Avenue, Dallas, TX 75275-0314, USA.

Classifications MeSH