Mitochondrial COI gene is valid to delimitate Tylenchidae (Nematoda: Tylenchomorpha) species.
Journal
Journal of nematology
ISSN: 0022-300X
Titre abrégé: J Nematol
Pays: Poland
ID NLM: 9884299
Informations de publication
Date de publication:
2020
2020
Historique:
received:
03
01
2020
entrez:
25
4
2020
pubmed:
25
4
2020
medline:
25
4
2020
Statut:
ppublish
Résumé
Tylenchidae is a widely distributed soil-inhabiting nematode family. Regardless their abundance, molecular phylogeny based on rRNA genes is problematic, and the delimitation of taxa in this group remains poorly documented and highly uncertain. Mitochondrial Cytochrome Oxidase I (COI) gene is an important barcoding gene that has been widely used species identifications and phylogenetic analyses. However, currently COI data are only available for one species in Tylenchidae. In present study, we newly obtained 27 COI sequences from 12 species and 26 sequences from rRNA genes. The results suggest that the COI gene is valid to delimitate Tylenchidae species but fails to resolve phylogenetic relationships. Tylenchidae is a widely distributed soil-inhabiting nematode family. Regardless their abundance, molecular phylogeny based on rRNA genes is problematic, and the delimitation of taxa in this group remains poorly documented and highly uncertain. Mitochondrial Cytochrome Oxidase I (COI) gene is an important barcoding gene that has been widely used species identifications and phylogenetic analyses. However, currently COI data are only available for one species in Tylenchidae. In present study, we newly obtained 27 COI sequences from 12 species and 26 sequences from rRNA genes. The results suggest that the COI gene is valid to delimitate Tylenchidae species but fails to resolve phylogenetic relationships.
Identifiants
pubmed: 32330378
doi: 10.21307/jofnem-2020-038
pii: e2020-38
pmc: PMC7266042
doi:
Types de publication
Journal Article
Langues
eng
Pagination
1-12Références
Syst Biol. 2008 Oct;57(5):758-71
pubmed: 18853362
Mol Biol Evol. 2013 Apr;30(4):772-80
pubmed: 23329690
Mol Phylogenet Evol. 2008 Aug;48(2):728-44
pubmed: 18502668
Syst Biol. 2012 May;61(3):539-42
pubmed: 22357727
Mol Phylogenet Evol. 2017 Dec;117:30-48
pubmed: 28778818
PLoS Biol. 2004 Oct;2(10):e312
pubmed: 15455034
Mol Biochem Parasitol. 1992 Sep;54(2):165-73
pubmed: 1435857
Comput Appl Biosci. 1996 Aug;12(4):357-8
pubmed: 8902363
Nat Methods. 2012 Jul 30;9(8):772
pubmed: 22847109
Bioinformatics. 2020 Feb 15;36(4):1052-1056
pubmed: 31529041
Mol Phylogenet Evol. 2007 Jun;43(3):1185-97
pubmed: 17433722
Phytopathology. 2019 May;109(5):847-858
pubmed: 30422745
Annu Rev Phytopathol. 2004;42:367-83
pubmed: 15497206
Mol Biol Evol. 2006 Sep;23(9):1792-800
pubmed: 16790472
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13
pubmed: 20435676