Predicting severe clinical events by learning about life-saving actions and outcomes using distant supervision.

Acute organ failure prediction Distant supervision Early warning scores Failure to rescue Machine learning

Journal

Journal of biomedical informatics
ISSN: 1532-0480
Titre abrégé: J Biomed Inform
Pays: United States
ID NLM: 100970413

Informations de publication

Date de publication:
07 2020
Historique:
received: 14 05 2019
revised: 17 04 2020
accepted: 18 04 2020
pubmed: 30 4 2020
medline: 29 7 2021
entrez: 30 4 2020
Statut: ppublish

Résumé

Medical error is a leading cause of patient death in the United States. Among the different types of medical errors, harm to patients caused by doctors missing early signs of deterioration is especially challenging to address due to the heterogeneity of patients' physiological patterns. In this study, we implemented risk prediction models using the gradient boosted tree method to derive risk estimates for acute onset diseases in the near future. The prediction model uses physiological variables as input signals and the time of the administration of outcome-related interventions and discharge diagnoses as labels. We examine four categories of acute onset illness: acute heart failure (AHF), acute lung injury (ALI), acute kidney injury (AKI), and acute liver failure (ALF). To develop and test the model, we consider data from two sources: 23,578 admissions to the Intensive Care Unit (ICU) from the MIMIC-3 dataset (Beth-Israel Hospital) and 16,612 ICU admissions on hospitals affiliated with our institution (University of Washington Medical Center and Harborview Medical Center, the UW-CDR dataset). We systematically identify outcome-related interventions for each acute organ failure, then use them, along with discharge diagnoses, to label proxy events to train gradient boosted trees. The trained models achieve the highest F1 score with a value of 0.6018 when predicting the need for life-saving interventions for ALI within the next 24 h in the MIMIC-3 dataset while showing a median F1 score of 0.3850 from all acute organ failures in both datasets. The approach also achieves the highest F1 score of 0.6301 when classifying a patient's ALI status at the time of discharge from the MIMIC-3 dataset, with a median F1 score of 0.4307 in both datasets. This study shows the potential for using the time of outcome-related intervention administrations and discharge diagnoses as labels to train supervised machine learning models that predict the risk of acute onset illnesses.

Identifiants

pubmed: 32348850
pii: S1532-0464(20)30053-8
doi: 10.1016/j.jbi.2020.103425
pii:
doi:

Types de publication

Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

103425

Subventions

Organisme : NCATS NIH HHS
ID : UL1 TR002319
Pays : United States

Informations de copyright

Copyright © 2020 Elsevier Inc. All rights reserved.

Déclaration de conflit d'intérêts

Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Auteurs

Dae Hyun Lee (DH)

Biomedical & Health Informatics, School of Medicine, University of Washington, Seattle, WA, USA. Electronic address: dhlee4@uw.edu.

Meliha Yetisgen (M)

Biomedical & Health Informatics, School of Medicine, University of Washington, Seattle, WA, USA.

Lucy Vanderwende (L)

Biomedical & Health Informatics, School of Medicine, University of Washington, Seattle, WA, USA.

Eric Horvitz (E)

Biomedical & Health Informatics, School of Medicine, University of Washington, Seattle, WA, USA; Microsoft Research, Redmond, WA, USA.

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